# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fhzB	108	5.868	d.243.1.2	133506
1vmfA	145	13.28	d.273.1.1	113673
2yxyA	115	18.01		
1zd1A	284	22.13		
3b73A	111	23.69		
2cu5A	129	24.34		
3b79A	129	26.56		
1i1dA	161	28.17	d.108.1.1	61526
2pimA	141	29.55		
2d1vA	108	31.30		
1vjyA	303	31.74	d.144.1.7	108633
1u4nA	310	32.04	c.69.1.2	113021
2d28C	149	32.91		
2ip2A	334	36.81		
3bs3A	76	38.07		
1m2oA	768	39.03	a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1	78480,78481,78482,78483,78484
1eyqA	222	39.99	d.36.1.1	38534
1svjA	156	42.13	d.220.1.1	106049
2z1yA	397	43.04		
1o4sA	389	43.19	c.67.1.1	86620
2v1nA	111	44.09		
2q22A	139	46.09		
3b59A	310	46.51		
2dtrA	226	51.15	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2vo9A	179	52.56		
1tw3A	360	54.16	a.4.5.29,c.66.1.12	107373,107374
2zg5A	397	56.05		
1kafA	108	58.94	d.199.1.1	68372
1kdoA	227	59.11	c.37.1.1	68478
1xj4A	119	59.90	d.110.3.2	122027
2r4fA	441	61.31		
2i9fA	69	63.92		
1v54D	147	64.69	f.23.1.1	100325
1o08A	221	66.05	c.108.1.6	86525
2hm7A	310	68.34		
1lddA	74	68.53	a.4.5.34	73841
1vqo2	50	71.29		
2hinA	71	79.07		
2grrA	161	80.94		
1x59A	73	81.35		
1on2A	142	88.57	a.4.5.24,a.76.1.1	87103,87104
1ijxA	127	89.11	a.141.1.1	62511
1r1mA	164	89.52	d.79.7.1	96820