# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rmwA	212	15.40		
1xn5A	146	21.06	d.129.3.5	115574
2gbaA	105	23.61		
1kb0A	677	27.23	a.3.1.6,b.70.1.1	68378,68379
2dtrA	226	31.15	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2gqcA	70	36.22		
1smpI	101	37.77	b.61.2.1	27417
1ah7	245	39.97		
2a2kA	175	42.39		
1qqhA	144	43.96	b.91.1.1	28404
1jiwI	106	47.58	b.61.2.1	63078
2uubT	106	47.66	a.7.6.1	139951
2ditA	112	51.33	d.58.7.1	131533
1uarA	285	61.29	c.46.1.2,c.46.1.2	107762,107763
1mp1A	111	61.93	a.188.1.1	91382
2ds3A	761	70.07		
2e9qA	459	76.74		
1rhsA	296	77.42	c.46.1.2,c.46.1.2	32703,32704
2ex4A	241	78.21	c.66.1.42	132516
1t62A	166	78.47	b.122.1.4	106541
1ymkA	175	84.78	c.46.1.1	123699
1a0rG	65	84.80	a.137.3.1	19639
2v36A	376	88.36