# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gbaA	105	14.78		
1rmwA	212	19.55		
1ah7	245	29.34		
2dtrA	226	32.40	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2uubT	106	34.10	a.7.6.1	139951
1xn5A	146	39.56	d.129.3.5	115574
1kb0A	677	41.49	a.3.1.6,b.70.1.1	68378,68379
2gqcA	70	50.23		
1jiwI	106	53.85	b.61.2.1	63078
2a2kA	175	54.75		
1smpI	101	57.51	b.61.2.1	27417
2idqA	105	63.61		
1uarA	285	63.97	c.46.1.2,c.46.1.2	107762,107763
2ra6A	166	64.45		
2e9qA	459	66.79		
1hllA	32	73.08	j.94.1.1	70966
1ev7A	317	75.53	c.52.1.9	33315
1qisA	396	76.69	c.67.1.1	34284
1sskA	158	81.23	b.148.1.1	105986
1qqhA	144	86.39	b.91.1.1	28404
2ov0A	105	89.55		
1v37A	177	89.66	c.60.1.1	113497
1mp1A	111	89.67	a.188.1.1	91382