# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mk4A	157	26.81	d.108.1.1	84979
2gbaA	105	28.24		
1h6kZ	98	29.06	d.58.7.1	60686
1v37A	177	30.08	c.60.1.1	113497
1rmwA	212	30.57		
2e9qA	459	31.32		
1uarA	285	32.45	c.46.1.2,c.46.1.2	107762,107763
1smpI	101	35.64	b.61.2.1	27417
2uubT	106	36.83	a.7.6.1	139951
1ah7	245	38.27		
1xbbA	291	40.84	d.144.1.7	115077
2dtrA	226	42.49	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1jnyA	435	46.86	b.43.3.1,b.44.1.1,c.37.1.8	66982,66983,66984
2ivwA	113	47.20		
2idqA	105	55.89		
1qqhA	144	56.03	b.91.1.1	28404
1j58A	385	59.94	b.82.1.2	71531
2ak5A	64	61.29		
1utiA	58	61.38	b.34.2.1	99962
1rhs	296	61.68		
1kb0A	677	62.09	a.3.1.6,b.70.1.1	68378,68379
1u5fA	148	62.31	b.55.1.1	119542
1rhsA	296	62.63	c.46.1.2,c.46.1.2	32703,32704
1oebA	62	63.45	b.34.2.1	86909
1w70A	60	65.23		
1fi2A	201	65.28	b.82.1.2	59845
1jiwI	106	68.35	b.61.2.1	63078
1f60A	458	68.60	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1g31A	111	71.38	b.35.1.1	24656
2p25A	126	72.66		
1t0tV	248	72.69	d.58.4.10	106229
1sskA	158	73.21	b.148.1.1	105986
2okfA	140	76.20		
2hbtA	247	76.61		
1wekA	217	78.21	c.129.1.1	114553
1ekgA	127	79.80	d.82.2.1	40021
1vqoQ	96	80.23	b.34.5.1	120378
2i33A	258	81.03		
2btlA	134	82.00	b.148.1.1	129154
2g19A	244	82.32		
1w9pA	433	84.84	c.1.8.5,d.26.3.1	114412,114413
1w0dA	337	85.03	c.77.1.1	114060
2ov0A	105	86.12