# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xn5A	146	22.45	d.129.3.5	115574
1rmwA	212	22.55		
2gbaA	105	22.95		
1ah7	245	26.88		
2v36A	376	29.94		
1smpI	101	33.01	b.61.2.1	27417
1qqhA	144	33.96	b.91.1.1	28404
1kb0A	677	45.98	a.3.1.6,b.70.1.1	68378,68379
2e9qA	459	48.16		
1mp1A	111	48.62	a.188.1.1	91382
1jiwI	106	50.83	b.61.2.1	63078
2ex4A	241	54.62	c.66.1.42	132516
2dtrA	226	55.46	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1sskA	158	57.77	b.148.1.1	105986
2qmcA	377	58.40		
2giaA	195	61.74	d.18.1.4	135221
1a0rG	65	63.06	a.137.3.1	19639
1x3lA	440	76.80		
1gotG	73	81.72	a.137.3.1	19629
1uarA	285	82.10	c.46.1.2,c.46.1.2	107762,107763
2gqcA	70	82.30		
2a2kA	175	83.84		
2nqoA	376	84.81	d.153.1.6	138473
1mk4A	157	85.03	d.108.1.1	84979
2ffcA	353	88.56	c.1.2.3	133378
2ditA	112	89.70	d.58.7.1	131533