# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rmwA	212	22.18		
2dtrA	226	31.16	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2uubT	106	32.98	a.7.6.1	139951
1ah7	245	33.49		
2gbaA	105	35.10		
1jiwI	106	36.83	b.61.2.1	63078
1smpI	101	39.65	b.61.2.1	27417
1xn5A	146	54.88	d.129.3.5	115574
1mp1A	111	59.24	a.188.1.1	91382
2ditA	112	59.84	d.58.7.1	131533
1kb0A	677	63.23	a.3.1.6,b.70.1.1	68378,68379
1qqhA	144	64.67	b.91.1.1	28404
2ex4A	241	67.32	c.66.1.42	132516
2v36A	376	74.99		
2ffcA	353	82.16	c.1.2.3	133378
2gqcA	70	84.82		
1uarA	285	86.47	c.46.1.2,c.46.1.2	107762,107763