# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qalC 232 1.020 1t5oA 351 2.653 c.124.1.5 106459 2i7vA 459 6.537 1xd3A 230 6.767 d.3.1.6 115145 3pyp 125 7.017 1lm7A 248 7.274 d.211.2.1 74031 2o5fA 171 7.565 1nwzA 125 7.613 d.110.3.1 86370 1pn0A 665 7.781 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1ef1A 294 7.920 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1jiwI 106 8.694 b.61.2.1 63078 2qkpA 151 8.792 1h3gA 601 8.893 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1yloA 348 10.02 b.49.3.1,c.56.5.4 123659,123660 2dhoA 235 11.53 1i1jA 108 11.67 b.34.2.1 61531 2h88A 621 12.68 1qqhA 144 13.66 b.91.1.1 28404 2g1iA 563 13.84 2ikqA 270 14.33 1zbpA 273 14.62 e.61.1.1 124861 2i74A 189 14.90 b.18.1.29 137100 1vlcA 366 15.01 c.77.1.1 108743 1m7xA 617 16.77 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2v7kA 361 16.87 2uvkA 357 18.28 2dtrA 226 21.48 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2gy9C 206 21.54 2r6uA 148 25.58 1j1lA 290 25.81 b.82.1.12 90766 1xafA 246 26.90 d.194.1.2 109535 2rghA 571 28.71 1qo8A 566 30.05 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1v84A 253 31.11 c.68.1.7 108419 2iumA 248 31.35 1t9kA 347 31.44 c.124.1.5 106721 2gbaA 105 32.78 1pkhA 204 33.41 b.85.4.1 94832 3bk2A 562 33.82 1nuiA 255 34.12 e.13.1.2,g.41.3.2 86194,86195 2burA 209 34.25 b.3.6.1 129227 1ms9A 648 34.72 b.29.1.15,b.68.1.1 85088,85089 2gvkA 317 34.99 d.58.4.14 135782 1s1iG 119 35.14 i.1.1.1 105181 1rxwA 336 35.34 a.60.7.1,c.120.1.2 98059,98060 1xn5A 146 35.61 d.129.3.5 115574 2nteA 210 37.06 1qusA 322 38.59 d.2.1.6 36991 1ee8A 266 39.77 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2p10A 286 40.09 2ifrA 206 40.49 b.29.1.20 137346 1r6vA 671 40.81 c.41.1.1 111710 2ditA 112 41.00 d.58.7.1 131533 1jqnA 883 41.09 c.1.12.3 77159 1t7lA 766 43.37 1ndh 272 43.44 1mzuA 129 43.68 d.110.3.1 79714 1d0cA 444 45.24 d.174.1.1 64769 3brcA 156 45.99 1bifA 469 46.30 c.37.1.7,c.60.1.4 31961,34003 2nvoA 535 46.58 1s9aA 257 47.05 b.3.6.1 105379 2gpjA 252 47.77 1ew4A 106 48.20 d.82.2.1 40023 1c4kA 730 48.86 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1od5A 492 48.89 b.82.1.2,b.82.1.2 86832,86833 2b8nA 429 49.56 c.118.1.1 128093 1vb5A 276 49.69 c.124.1.5 113604 2h7wA 131 51.42 b.1.26.1 136225 1xvlA 321 51.79 c.92.2.2 122380 1pmd 675 52.71 2ef5A 290 52.88 2r3bA 310 53.53 1mp1A 111 55.35 a.188.1.1 91382 1iysA 262 55.52 e.3.1.1 90723 2r55A 231 59.47 3cnwA 148 59.66 1smpI 101 61.10 b.61.2.1 27417 2rk0A 136 61.47 2gqcA 70 61.66 2v0uA 146 62.00 3c3dA 311 62.82 2fstX 367 67.14 1z0nA 96 67.24 2i3oA 516 68.67 d.153.1.6 137027 2e7uA 424 69.91 2amuA 143 71.46 2btlA 134 71.50 b.148.1.1 129154 1guqA 348 72.55 d.13.1.2,d.13.1.2 37522,37523 1w2wB 191 73.67 2qmcA 377 73.81 1vprA 374 73.83 b.60.1.7 120066 1d2kA 392 74.00 c.1.8.5,d.26.3.1 29008,38442 1z3eB 73 74.62 a.60.3.1 124401 2uubT 106 75.26 a.7.6.1 139951 1r9lA 309 76.54 c.94.1.1 97262 1bif 469 78.03 1qh4A 380 79.15 a.83.1.1,d.128.1.2 18462,41197 1bplB 294 79.55 b.71.1.1 27716 1ylnA 252 79.94 b.45.2.1,b.45.2.2 123657,123658 1vqoQ 96 80.39 b.34.5.1 120378 2nqoA 376 81.38 d.153.1.6 138473 1zu0A 529 81.62 1o7dA 298 81.91 c.6.2.1 86641 2yrbA 156 82.07 1ekgA 127 82.26 d.82.2.1 40021 2pd8A 149 82.53 1j79A 347 82.86 c.1.9.4 62675 1lw6I 64 83.02 d.40.1.1 74294 1so7A 382 83.14 b.68.1.1 112106 1dbiA 280 84.63 c.41.1.1 32543 1u2hA 99 84.81 2qqzA 126 86.01 1bouB 302 86.49 c.56.6.1 33859 1ypcI 64 86.55 d.40.1.1 38570 2o02A 230 87.65 1qqyA 130 87.85 d.2.1.2 36586 2v74B 346 88.42 1zrzA 364 88.58 2giaA 195 89.58 d.18.1.4 135221 3d72A 149 90.00