# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqkA	97	7.743	b.137.1.1	93419
2giaA	195	8.237	d.18.1.4	135221
2gbaA	105	9.225		
2uubT	106	14.89	a.7.6.1	139951
1t0tV	248	15.87	d.58.4.10	106229
1h6kZ	98	18.78	d.58.7.1	60686
2btlA	134	19.89	b.148.1.1	129154
1sskA	158	19.93	b.148.1.1	105986
2ditA	112	21.07	d.58.7.1	131533
2a2kA	175	25.88		
1oe8A	211	26.36	a.45.1.1,c.47.1.5	86905,86906
1ev7A	317	26.47	c.52.1.9	33315
1q52A	314	27.12	c.14.1.3	95846
1u8tA	129	35.51	c.23.1.1	113192
1vqoQ	96	36.46	b.34.5.1	120378
1zhvA	134	36.90	d.58.18.8,d.58.18.8	125109,125110
2h7wA	131	37.35	b.1.26.1	136225
2orwA	184	38.01		
1ptfA	88	38.67	d.94.1.1	40549
1wh5A	80	38.69	a.4.1.1	114633
1qisA	396	42.94	c.67.1.1	34284
1vhtA	218	43.61	c.37.1.1	100700
2ofzA	138	46.42		
1y51A	88	48.21		
1rhsA	296	49.91	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	51.01	c.46.1.1	123699
1pymA	295	55.31	c.1.12.7	29308
1e54A	332	58.14	f.4.3.1	59258
1rmwA	212	59.51		
1uarA	285	59.98	c.46.1.2,c.46.1.2	107762,107763
2qsbA	89	60.06		
1jj2P	95	61.32	b.34.5.1	63101
2p8gA	162	64.01		
1v37A	177	64.48	c.60.1.1	113497
2eqxA	105	64.91		
1w9aA	147	65.07	b.45.1.1	114408
1v7nV	163	70.63	a.26.1.2	100476
2qalC	232	73.05		
1a8l	226	76.43		
2f9iA	327	76.88		
1rhs	296	77.28		
1t62A	166	77.97	b.122.1.4	106541
1qqhA	144	78.48	b.91.1.1	28404
2jbaA	127	79.06		
1ptf	88	84.50		
2go9A	161	86.74		
1vzyA	291	88.71	d.193.1.1,g.81.1.1	114042,114043
1mo1A	87	89.48	d.94.1.1	91363