# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	3.24e-19	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	2.22e-16	c.55.3.10	120785
1m6iA	493	5.289	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1shuX	182	6.716	c.62.1.1	98882
1gv4A	528	6.861	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1glcG	501	15.58	c.55.1.4,c.55.1.4	33519,33520
1wkvA	389	16.46	c.79.1.1	120989
1j0dA	341	17.83	c.79.1.1	83902
1jeyB	565	20.21	b.131.1.2,c.62.1.4	90372,90373
1bu6O	501	21.49	c.55.1.4,c.55.1.4	33499,33500
1mf7A	194	23.91	c.62.1.1	84937
1j0aA	325	24.98	c.79.1.1	83871
2z08A	137	28.46		
3be4A	217	28.46		
1uh6A	100	28.49	d.15.1.1	99394
3pmgA	561	32.96	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1fj2A	232	38.52	c.69.1.14	34720
1jeqB	565	39.44	b.131.1.2,c.62.1.4	90368,90369
2bi7A	384	41.52		
1rj9A	304	47.07	a.24.13.1,c.37.1.10	97553,97554
1xngA	268	52.06	c.26.2.1	122186
1tffA	234	52.24	d.3.1.11	106854
1xdpA	687	53.53	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
2pfsA	150	55.42		
1i39A	225	58.20	c.55.3.1	61585
1d7yA	408	58.53	c.3.1.5,c.3.1.5,d.87.1.1	30565,30566,40204
1tzjA	338	62.90	c.79.1.1	112868
1a6f	119	64.12		
2gm3A	175	64.62	c.26.2.4	135354
2op6A	152	69.92		
1wcwA	261	70.05		
2fvyA	309	76.99	c.93.1.1	134227
2zogA	479	80.96		
2cduA	452	81.95		
1tfr	305	83.22		
1wd5A	208	83.24	c.61.1.1	114524
1yirA	408	83.27	c.1.17.2,d.41.2.2	123330,123331
2qm1A	326	85.58		
2okfA	140	88.94		
1ftkA	279	89.18	c.94.1.1	35819