# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	8.37e-20	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	5.22e-17	c.55.3.10	120785
1shuX	182	4.999	c.62.1.1	98882
1uh6A	100	7.624	d.15.1.1	99394
1bu6O	501	13.23	c.55.1.4,c.55.1.4	33499,33500
1gv4A	528	13.65	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1m6iA	493	13.80	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1glcG	501	15.10	c.55.1.4,c.55.1.4	33519,33520
1xdpA	687	17.88	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
1wkvA	389	25.72	c.79.1.1	120989
1j0dA	341	25.74	c.79.1.1	83902
1mf7A	194	28.70	c.62.1.1	84937
1rj9A	304	30.80	a.24.13.1,c.37.1.10	97553,97554
2z08A	137	32.87		
3pmgA	561	34.35	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1j0aA	325	34.90	c.79.1.1	83871
2pfsA	150	38.72		
2bi7A	384	43.50		
1a6f	119	43.77		
1j97A	211	54.55	c.108.1.4	62753
2op6A	152	66.75		
1jeyB	565	67.86	b.131.1.2,c.62.1.4	90372,90373
3be4A	217	69.97		
1d6tA	117	70.51	d.14.1.2	37565
1i39A	225	70.52	c.55.3.1	61585
1jeqB	565	70.82	b.131.1.2,c.62.1.4	90368,90369
1wcwA	261	72.08		
2qh9A	184	74.42		
1xk4C	113	76.09	a.39.1.2	122057
2gm3A	175	76.95	c.26.2.4	135354
2qimA	158	80.71		
1d7yA	408	80.91	c.3.1.5,c.3.1.5,d.87.1.1	30565,30566,40204
2cduA	452	82.56		
1tzjA	338	84.86	c.79.1.1	112868
1tffA	234	85.56	d.3.1.11	106854
1fj2A	232	85.78	c.69.1.14	34720
2a6tA	271	86.38	a.242.1.1,d.113.1.7	126309,126310
3b9qA	302	88.22