# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.85e-18	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	5.77e-16	c.55.3.10	120785
1shuX	182	6.829	c.62.1.1	98882
1uh6A	100	7.726	d.15.1.1	99394
1m6iA	493	8.379	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1gv4A	528	9.198	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
3pmgA	561	19.69	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
3be4A	217	28.27		
1fj2A	232	29.06	c.69.1.14	34720
1rj9A	304	31.01	a.24.13.1,c.37.1.10	97553,97554
1j0dA	341	33.48	c.79.1.1	83902
2z08A	137	34.74		
1mf7A	194	38.03	c.62.1.1	84937
1xdpA	687	38.81	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
1wkvA	389	43.29	c.79.1.1	120989
1a6f	119	50.33		
1q1lA	401	54.30	d.258.1.1	95591
2zogA	479	54.30		
2qh9A	184	55.27		
2fvyA	309	61.18	c.93.1.1	134227
1wcwA	261	63.00		
2ddxA	333	64.00		
2bi7A	384	66.33		
1jeyB	565	70.15	b.131.1.2,c.62.1.4	90372,90373
1jy2P	48	70.67	h.1.8.1	67442
1vheA	373	72.58	b.49.3.1,c.56.5.4	100669,100670
3cpxA	321	75.05		
1jeqB	565	75.47	b.131.1.2,c.62.1.4	90368,90369
1spbP	78	77.80	d.58.3.2	39068
2qy9A	309	79.36		
2okfA	140	79.36		
1glcG	501	81.08	c.55.1.4,c.55.1.4	33519,33520
2og2A	359	81.82		
1tffA	234	82.88	d.3.1.11	106854
1tfr	305	83.14		
1tzjA	338	84.13	c.79.1.1	112868
1j0aA	325	84.27	c.79.1.1	83871
1qxoA	388	85.62	d.258.1.1	96539
1wmhA	89	85.77	d.15.2.2	114744
3b9qA	302	88.22