# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	9.39e-18	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	1.74e-15	c.55.3.10	120785
1shuX	182	5.500	c.62.1.1	98882
1m6iA	493	8.853	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1uh6A	100	11.71	d.15.1.1	99394
1gv4A	528	15.80	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
3pmgA	561	19.90	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1j0dA	341	23.30	c.79.1.1	83902
1mf7A	194	24.01	c.62.1.1	84937
2z08A	137	25.95		
1xdpA	687	26.41	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
1fj2A	232	27.12	c.69.1.14	34720
1wkvA	389	32.00	c.79.1.1	120989
1rj9A	304	32.33	a.24.13.1,c.37.1.10	97553,97554
3be4A	217	32.40		
1jeqB	565	39.57	b.131.1.2,c.62.1.4	90368,90369
1j0aA	325	40.98	c.79.1.1	83871
2fvyA	309	47.25	c.93.1.1	134227
1jeyB	565	48.50	b.131.1.2,c.62.1.4	90372,90373
1tzjA	338	55.08	c.79.1.1	112868
1wcwA	261	56.55		
2zogA	479	59.81		
1a6f	119	63.28		
1glcG	501	69.06	c.55.1.4,c.55.1.4	33519,33520
1tfr	305	69.45		
2ddxA	333	70.18		
2dgbA	84	70.61		
2qm0A	275	71.73		
2qy9A	309	76.70		
3b9qA	302	77.94		
2og2A	359	79.04		
2gm3A	175	85.65	c.26.2.4	135354
1ftkA	279	87.47	c.94.1.1	35819
2okfA	140	89.25