# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	2.75e-18	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	7.67e-16	c.55.3.10	120785
1shuX	182	5.110	c.62.1.1	98882
1m6iA	493	8.421	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1uh6A	100	11.91	d.15.1.1	99394
1gv4A	528	12.94	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1j0dA	341	20.18	c.79.1.1	83902
3be4A	217	23.40		
1mf7A	194	23.63	c.62.1.1	84937
1fj2A	232	24.19	c.69.1.14	34720
3pmgA	561	25.12	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1rj9A	304	25.56	a.24.13.1,c.37.1.10	97553,97554
1xdpA	687	29.14	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
2z08A	137	31.53		
1jeqB	565	37.10	b.131.1.2,c.62.1.4	90368,90369
1wkvA	389	39.11	c.79.1.1	120989
2fvyA	309	47.17	c.93.1.1	134227
1j0aA	325	48.78	c.79.1.1	83871
1jeyB	565	49.60	b.131.1.2,c.62.1.4	90372,90373
2bi7A	384	51.07		
1wcwA	261	52.88		
1a6f	119	55.76		
2zogA	479	56.10		
1tzjA	338	59.37	c.79.1.1	112868
1q1lA	401	63.53	d.258.1.1	95591
2qy9A	309	66.54		
1jy2P	48	76.53	h.1.8.1	67442
2og2A	359	78.33		
2ddxA	333	78.78		
2qm0A	275	81.88		
1glcG	501	86.09	c.55.1.4,c.55.1.4	33519,33520
3b9qA	302	86.23		
1z7yA	322	88.40	c.79.1.1	124679