# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	8.97e-20	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	3.49e-17	c.55.3.10	120785
1shuX	182	3.888	c.62.1.1	98882
1uh6A	100	8.890	d.15.1.1	99394
1m6iA	493	10.58	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1gv4A	528	13.14	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1glcG	501	23.01	c.55.1.4,c.55.1.4	33519,33520
1bu6O	501	23.01	c.55.1.4,c.55.1.4	33499,33500
1mf7A	194	24.15	c.62.1.1	84937
2zogA	479	26.60		
1wkvA	389	26.96	c.79.1.1	120989
1j0dA	341	27.57	c.79.1.1	83902
1a6f	119	34.47		
1xdpA	687	36.02	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
1fj2A	232	42.72	c.69.1.14	34720
2z08A	137	43.17		
2pfsA	150	46.26		
3be4A	217	47.97		
3pmgA	561	48.05	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1xk4A	93	52.14	a.39.1.2	122055
2qh9A	184	56.05		
1wcwA	261	58.12		
3b9qA	302	62.47		
1liiA	363	67.21	c.72.1.1	73921
1tzjA	338	68.15	c.79.1.1	112868
1rj9A	304	69.17	a.24.13.1,c.37.1.10	97553,97554
1xk4C	113	71.85	a.39.1.2	122057
2h2kA	106	72.52		
3cpxA	321	72.84		
2qy9A	309	75.38		
1qlsA	99	81.27	a.39.1.2	17185
1yb0A	159	82.04	d.118.1.1	122865
1eg5A	384	84.76	c.67.1.3	34429
1yvkA	163	84.99	d.108.1.1	124101