# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.63e-21 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.91e-18 c.55.3.10 120785 1ea9C 583 0.4707 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1mf7A 194 3.091 c.62.1.1 84937 1shuX 182 4.083 c.62.1.1 98882 2f2uA 402 8.037 1j0dA 341 8.438 c.79.1.1 83902 4matA 278 8.790 d.127.1.1 41150 3be4A 217 9.330 1ni5A 433 10.08 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1qopB 396 11.33 c.79.1.1 35270 1u2zA 433 11.54 c.66.1.31 107626 1evlA 401 12.61 c.51.1.1,d.104.1.1 33202,40751 1xdpA 687 13.05 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1uh6A 100 14.25 d.15.1.1 99394 2qmjA 870 14.61 2aytA 237 14.77 2pmlX 348 15.80 2j13A 247 16.15 c.6.2.3 137934 1gv4A 528 17.90 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1gt91 357 17.91 1fwcC 567 18.25 b.92.1.1,c.1.9.2 28410,29032 2e67A 264 19.74 1ve5A 311 21.06 c.79.1.1 120013 1qxyA 252 21.15 d.127.1.1 96565 1ig8A 486 22.49 c.55.1.3,c.55.1.3 64746,64747 1rj9A 304 23.27 a.24.13.1,c.37.1.10 97553,97554 1jeyB 565 23.30 b.131.1.2,c.62.1.4 90372,90373 2pfsA 150 24.48 2r3iA 298 24.69 1nhsA 447 27.11 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1a6f 119 27.49 2qh9A 184 28.12 2fp3A 316 28.21 2napA 723 28.31 b.52.2.2,c.81.1.1 26926,35334 2e7zA 727 28.78 1whsA 255 31.09 c.69.1.5 34649 1nhpA 447 31.11 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1yzyA 413 31.45 c.146.1.1 124292 2uvfA 608 31.66 2d1gA 498 31.71 1w18A 493 32.35 1qjdA 571 33.46 a.138.1.3,c.3.1.4,d.168.1.1 19695,30432,42315 1spbP 78 33.52 d.58.3.2 39068 2r60A 499 33.59 2o0tA 467 34.32 2qy9A 309 35.48 1ibcA 194 36.34 c.17.1.1 30997 1nhp 447 36.74 1itcA 516 36.79 b.3.1.1,c.1.8.1 83705,83706 2cduA 452 37.14 1v7oA 165 37.26 d.67.1.2 100480 1fj2A 232 37.31 c.69.1.14 34720 1yqzA 438 37.87 2oc3A 303 39.80 3bkhA 268 40.18 1qc5A 192 40.29 c.62.1.1 34147 1wd5A 208 41.67 c.61.1.1 114524 1gycA 499 42.73 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2o8bB 1022 42.78 2vg3A 284 44.32 1k77A 260 44.72 c.1.15.5 72096 1zu4A 320 44.85 1pydA 556 44.90 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1vkpA 383 45.60 d.126.1.6 108686 2ar9A 278 46.41 2absA 383 49.44 c.72.1.1 126534 3bblA 287 49.75 2b6nA 278 50.35 3biqA 467 50.50 1i60A 278 50.81 c.1.15.4 71118 1glcG 501 51.94 c.55.1.4,c.55.1.4 33519,33520 3grs 478 52.17 1pb7A 292 53.35 c.94.1.1 88025 1v7pC 200 53.42 c.62.1.1 108408 1xngA 268 54.34 c.26.2.1 122186 3pmgA 561 54.48 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1n6eA 1071 54.68 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1vptA 348 55.69 c.66.1.25 34207 2o8bA 934 56.34 2hlsA 243 56.55 1bw0A 416 56.65 c.67.1.1 34385 1ek6A 348 56.89 c.2.1.2 29800 1v04A 355 57.66 b.68.6.2 100240 1poxA 585 57.84 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2qcvA 332 59.05 1yvkA 163 59.14 d.108.1.1 124101 1qksA 567 59.30 a.3.1.2,b.70.2.1 15951,27710 1wcwA 261 59.45 1wyuB 474 59.50 c.67.1.7 121453 1csnA 298 59.60 d.144.1.7 41664 2z08A 137 59.99 2vhxA 377 60.00 2ihtA 573 60.68 1y1nA 291 65.04 1h3qA 140 65.53 d.110.4.3 76652 1fgkA 310 67.76 d.144.1.7 41693 1f4qA 165 68.61 a.39.1.8 17360 2v25A 259 68.81 2basA 431 68.87 c.1.33.1,d.110.6.2 128244,128245 2yvdA 431 69.84 1f75A 249 69.92 c.101.1.1 59662 1pfoA 500 72.52 f.9.1.1 43826 2zogA 479 72.71 2a19B 284 73.20 2pnqA 467 74.93 3bq5A 766 75.31 1z7yA 322 75.72 c.79.1.1 124679 2qp2A 511 76.20 2bklA 695 76.64 1oc2A 348 77.63 c.2.1.2 92765 1jscA 630 77.67 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 2qm1A 326 77.78 1rl4A 188 78.38 d.167.1.1 97636 2az4A 429 82.16 d.157.1.10 127597 1jbaA 204 82.40 a.39.1.5 17330 1wqaA 455 83.23 8abpA 306 84.13 c.93.1.1 35647 2a6tA 271 84.41 a.242.1.1,d.113.1.7 126309,126310 1yb0A 159 84.43 d.118.1.1 122865 3c4zA 543 87.36 1ga6A 372 87.59 c.41.1.2 32556 2eplX 627 89.15 1vmaA 306 89.16 a.24.13.1,c.37.1.10 108887,108888