# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.24e-19	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	6.59e-17	c.55.3.10	120785
1shuX	182	4.127	c.62.1.1	98882
1uh6A	100	13.58	d.15.1.1	99394
1m6iA	493	15.94	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1gv4A	528	22.96	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1j0dA	341	26.57	c.79.1.1	83902
1mf7A	194	26.96	c.62.1.1	84937
2zogA	479	28.27		
1glcG	501	29.77	c.55.1.4,c.55.1.4	33519,33520
1a6f	119	30.05		
1fj2A	232	30.58	c.69.1.14	34720
1bu6O	501	31.48	c.55.1.4,c.55.1.4	33499,33500
1rj9A	304	35.48	a.24.13.1,c.37.1.10	97553,97554
2z08A	137	36.11		
1xdpA	687	40.05	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
2pfsA	150	40.31		
1wkvA	389	40.45	c.79.1.1	120989
1xk4A	93	47.38	a.39.1.2	122055
3b9qA	302	48.12		
1wcwA	261	48.15		
2qy9A	309	54.56		
3be4A	217	55.48		
3pmgA	561	57.78	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
2qh9A	184	59.51		
1tzjA	338	69.15	c.79.1.1	112868
2og2A	359	71.70		
2h2kA	106	75.25		
1xk4C	113	75.92	a.39.1.2	122057
1zu4A	320	77.78		
1spbP	78	83.30	d.58.3.2	39068
2okfA	140	87.33