# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	2.86e-18	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	4.93e-16	c.55.3.10	120785
1gv4A	528	5.597	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1m6iA	493	6.586	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1shuX	182	6.768	c.62.1.1	98882
2z08A	137	10.59		
1mf7A	194	12.31	c.62.1.1	84937
1i39A	225	13.32	c.55.3.1	61585
1ido	192	13.64		
3pmgA	561	14.39	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1jeyB	565	20.82	b.131.1.2,c.62.1.4	90372,90373
1oakA	196	27.87	c.62.1.1	34138
1glcG	501	31.01	c.55.1.4,c.55.1.4	33519,33520
1woqA	267	32.68	c.55.1.10,c.55.1.10	109462,109463
1huxA	270	35.28	c.55.1.5	61278
1bu6O	501	35.48	c.55.1.4,c.55.1.4	33499,33500
1vmaA	306	39.24	a.24.13.1,c.37.1.10	108887,108888
2fvyA	309	40.74	c.93.1.1	134227
1oneA	436	42.55	c.1.11.1,d.54.1.1	29200,38844
1q1lA	401	45.84	d.258.1.1	95591
2bifA	469	46.05	c.37.1.7,c.60.1.4	31963,34009
2cduA	452	49.69		
3b9qA	302	50.29		
2pfsA	150	51.08		
2hoeA	380	51.14	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
1xhbA	472	53.46	b.42.2.1,c.68.1.17	115290,115291
3cneA	175	54.47		
2bi7A	384	54.61		
2qy9A	309	55.94		
1qc5A	192	56.33	c.62.1.1	34147
2gm3A	175	57.92	c.26.2.4	135354
1okjA	251	59.91	c.55.1.9,c.55.1.9	103998,103999
1tfr	305	60.02		
1snrA	341	64.93	b.6.1.3,b.6.1.3	105823,105824
1g0uE	234	65.01	d.153.1.4	41950
1io2A	213	66.49	c.55.3.1	62612
3ca8A	266	68.23		
2og2A	359	68.56		
2cmdA	312	72.22	c.2.1.5,d.162.1.1	30135,42102
1rypF	233	77.21	d.153.1.4	41937
1r1bA	59	77.53	a.16.1.3	16396
3bgvA	313	79.57		
1v7pC	200	80.19	c.62.1.1	108408
2d0bA	310	84.32