# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 9.71e-13 c.55.3.10 120785 1u04A 771 3.27e-11 b.34.14.1,c.55.3.10 107539,107540 2ax4A 198 2.598 1huxA 270 2.705 c.55.1.5 61278 1ekeA 230 3.820 c.55.3.1 33572 2ap1A 327 4.533 c.55.1.10,c.55.1.10 127108,127109 2d4wA 504 4.860 2a6aA 218 5.146 c.55.1.9,c.55.1.9 126231,126232 1zc6A 305 5.212 c.55.1.5,c.55.1.5 124888,124889 2pezA 179 5.573 1io2A 213 7.033 c.55.3.1 62612 1v4sA 455 7.416 c.55.1.3,c.55.1.3 100309,100310 2ivnA 330 8.400 2bifA 469 8.522 c.37.1.7,c.60.1.4 31963,34009 2dxnA 274 9.545 3bifA 468 10.53 c.37.1.7,c.60.1.4 31962,34008 2d59A 144 12.49 c.2.1.8 131266 1zupA 315 12.74 c.55.3.11 125681 2gx9A 129 13.00 d.299.1.1 135828 1woqA 267 13.60 c.55.1.10,c.55.1.10 109462,109463 1rkd 309 14.55 2djlA 314 14.62 3c61A 314 14.77 2e6fA 314 15.27 2e2oA 299 15.58 1czaN 917 15.97 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2yvuA 186 16.11 1qc5A 192 16.15 c.62.1.1 34147 2rhkA 140 16.42 2f7tA 227 16.45 1xpmA 396 16.85 c.95.1.2,c.95.1.2 115759,115760 3cneA 175 16.89 3d2fA 675 19.00 1jcfA 344 19.14 c.55.1.1,c.55.1.1 62878,62879 2ch5A 347 19.49 c.55.1.5,c.55.1.5 130453,130454 2b4gA 317 19.52 c.1.4.1 127829 1bif 469 21.31 2d0bA 310 22.05 1ni9A 338 22.38 e.7.1.2 85739 1okjA 251 22.72 c.55.1.9,c.55.1.9 103998,103999 2ywuA 181 23.00 1u6zA 513 23.62 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1bu6O 501 23.66 c.55.1.4,c.55.1.4 33499,33500 2zf5O 497 23.77 1akyA 220 24.28 c.37.1.1,g.41.2.1 31896,45197 1yuwA 554 25.68 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2qh9A 184 25.71 2fv7A 331 27.03 c.72.1.1 134197 1dgkN 917 27.19 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 1iukA 140 27.49 c.2.1.8 83712 2gelA 231 27.55 1zy9A 564 28.01 b.30.5.11,c.1.8.13 125813,125814 2p3rA 510 29.38 c.55.1.4,c.55.1.4 139471,139472 1wqaA 455 29.61 1y8cA 246 30.17 c.66.1.43 116563 1bupA 386 34.57 c.55.1.1,c.55.1.1 33377,33378 1kay 381 34.59 1musA 477 36.12 c.55.3.4 79494 1t6cA 315 36.74 c.55.1.8,c.55.1.8 106558,106559 1tvzA 388 37.57 c.95.1.2,c.95.1.2 107367,107368 1bifA 469 40.85 c.37.1.7,c.60.1.4 31961,34003 1e4fT 419 40.86 c.55.1.1,c.55.1.1 33453,33454 2d0oA 610 41.25 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1rkdA 309 42.33 c.72.1.1 34928 2aa4A 289 42.91 c.55.1.10,c.55.1.10 126465,126466 1k2yX 463 44.77 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2bsnA 145 47.60 1i39A 225 48.13 c.55.3.1 61585 1ig8A 486 48.28 c.55.1.3,c.55.1.3 64746,64747 1x6vA 630 48.50 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1tyyA 339 50.35 c.72.1.1 112850 1jfxA 217 50.63 c.1.8.8 62943 2qghA 425 52.26 1ur4A 399 52.53 c.1.8.3 113402 2qo3A 915 53.09 3cerA 343 54.46 1xpkC 388 55.86 c.95.1.2,c.95.1.2 115747,115748 2v03A 303 56.07 2itmA 484 56.58 2q2rA 373 60.21 1ba1 386 60.36 1y81A 138 60.76 c.2.1.8 122731 1vhwA 253 61.31 c.56.2.1 100706 2yhxA 457 64.82 i.12.1.1 46024 1pczA 191 67.60 d.129.1.1,d.129.1.1 41292,41293 1hjrA 158 67.68 c.55.3.6 33727 1kl1A 419 68.52 c.67.1.4 72663 1p5dX 463 69.06 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2dcnA 311 71.42 c.72.1.1 131374 1sz2A 332 71.56 c.55.1.7 112169 1bjnA 360 71.87 c.67.1.4 34469 1qq2A 199 72.48 c.47.1.10 33064 2v8pA 271 72.66 1wosA 364 72.68 b.44.2.1,d.250.1.1 109468,109469 1s5uA 138 73.84 d.38.1.1 98573 1dekA 241 74.45 c.37.1.1 31842 1glcG 501 76.10 c.55.1.4,c.55.1.4 33519,33520 1d0cA 444 78.42 d.174.1.1 64769 2qm1A 326 79.38 1v7pC 200 80.50 c.62.1.1 108408 1d3uA 181 81.63 d.129.1.1,d.129.1.1 41290,41291 3be4A 217 81.74 2pfsA 150 82.16 2vliA 183 82.38 1l0wA 580 85.68 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1shuX 182 86.69 c.62.1.1 98882 1qmvA 197 87.00 c.47.1.10 33066 1a8i 842 88.23 2o1cA 150 89.33