Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	4.6393e-32	1u04A/T0487-1u04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1w9hA	2.2233e-28	1w9hA/T0487-1w9hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
2qh9A	2.8019e-01	2qh9A/T0487-2qh9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zc6A	3.5088e+00	1zc6A/T0487-1zc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5 c.55.1.5
2ch5A	6.7611e+00	2ch5A/T0487-2ch5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5 c.55.1.5
1woqA	1.3095e+01	1woqA/T0487-1woqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.10 c.55.1.10
1tfr	1.4704e+01	1tfr/T0487-1tfr-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rypD	1.4992e+01	1rypD/T0487-1rypD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
3b5eA	1.7310e+01	3b5eA/T0487-3b5eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ax4A	1.7797e+01	2ax4A/T0487-2ax4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nrrA	1.8470e+01	2nrrA/T0487-2nrrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rypF	2.0828e+01	1rypF/T0487-1rypF-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
1g0uC	2.2374e+01	1g0uC/T0487-1g0uC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
1io2A	2.4675e+01	1io2A/T0487-1io2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.1
1rj9A	3.0210e+01	1rj9A/T0487-1rj9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.13.1 c.37.1.10
2hoeA	3.0536e+01	2hoeA/T0487-2hoeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.63 c.55.1.10 c.55.1.10
2qghA	3.2416e+01	2qghA/T0487-2qghA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bu6O	3.3557e+01	1bu6O/T0487-1bu6O-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.4 c.55.1.4
1l7mA	3.3684e+01	1l7mA/T0487-1l7mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.108.1.4
1bu8A	3.4311e+01	1bu8A/T0487-1bu8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.12.1.2 c.69.1.19

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001