# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 8.99e-30 c.55.3.10 120785 1u04A 771 5.41e-29 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 0.7389 1tfr 305 1.645 1zc6A 305 2.542 c.55.1.5,c.55.1.5 124888,124889 1g0uC 243 4.497 d.153.1.4 41948 1rypD 241 5.338 d.153.1.4 41935 2ch5A 347 5.587 c.55.1.5,c.55.1.5 130453,130454 2ax4A 198 6.449 2nrrA 159 6.817 2hoeA 380 8.441 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3b5eA 223 10.12 1xdzA 240 10.13 c.66.1.20 115196 2p3eA 420 11.29 1wb9A 800 13.43 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1woqA 267 13.47 c.55.1.10,c.55.1.10 109462,109463 1l7mA 211 13.53 c.108.1.4 73664 1kqpA 271 14.39 c.26.2.1 72883 2f2hA 773 14.79 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1y56B 382 14.80 1yarA 233 15.23 d.153.1.4 122837 2pezA 179 15.56 1xngA 268 15.66 c.26.2.1 122186 2g3mA 693 17.91 1mpxA 615 17.99 b.18.1.13,c.69.1.21 85041,85042 1thg 544 18.07 1rypF 233 19.07 d.153.1.4 41937 1l6rA 227 20.05 c.108.1.10 77768 1bu8A 452 21.37 b.12.1.2,c.69.1.19 23647,34795 2dplA 308 21.45 2qghA 425 21.52 1zd3A 555 21.57 c.108.1.2,c.69.1.11 124930,124931 1rj9A 304 21.74 a.24.13.1,c.37.1.10 97553,97554 1jdpA 441 22.12 c.93.1.1 62906 1fuiA 591 22.30 b.43.2.1,c.85.1.1 25674,35444 2gupA 292 22.69 c.55.1.10,c.55.1.10 135744,135745 1wr8A 231 24.13 c.108.1.10 114836 2qmjA 870 26.32 2dxnA 274 27.04 2e5aA 347 27.23 2i71A 400 28.13 2zodA 345 29.08 1z6rA 406 29.83 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1gpmA 525 30.35 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2qm8A 337 31.79 1rypC 244 32.86 d.153.1.4 41934 2fvkA 559 32.89 b.92.1.3,c.1.9.6 134204,134205 1h70A 255 33.77 d.126.1.3 60711 1u4nA 310 35.00 c.69.1.2 113021 1q15A 503 35.27 c.26.2.1,d.153.1.1 95538,95539 1cfzA 162 38.01 c.56.1.1 33754 2j66A 428 39.30 2k0mA 104 39.60 1z15A 344 41.17 3ce9A 354 43.00 2pfsA 150 44.08 1oe1A 336 46.39 b.6.1.3,b.6.1.3 86891,86892 1rypB 250 46.87 d.153.1.4 41933 1a4iA 301 48.58 c.2.1.7,c.58.1.2 30278,33926 1eg7A 557 49.13 c.37.1.10 32241 1k75A 434 49.17 c.82.1.2 68253 1hh1A 143 49.66 c.52.1.18 61036 1c3pA 375 50.76 c.42.1.2 32606 1wqaA 455 50.93 1vhyA 257 51.57 b.122.1.2,c.116.1.5 100714,100715 2uytA 489 51.59 2nxfA 322 52.28 2z08A 137 52.65 1khvA 516 52.94 e.8.1.4 68627 1s3iA 310 54.20 b.46.1.1,c.65.1.1 98435,98436 1vlpA 441 54.21 d.41.2.2,c.1.17.2 108840,108841 1an9A 340 55.20 c.4.1.2,d.16.1.3 30617,37904 2hm7A 310 58.66 2p3rA 510 58.67 c.55.1.4,c.55.1.4 139471,139472 2fvyA 309 60.76 c.93.1.1 134227 1wkvA 389 63.43 c.79.1.1 120989 1rlmA 271 63.69 c.108.1.10 111860 1twiA 434 64.30 b.49.2.3,c.1.6.1 107399,107400 1mhmA 288 65.09 2oc3A 303 66.20 2o2gA 223 66.54 1udxA 416 67.56 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2bgxA 261 68.08 a.20.1.1,d.118.1.1 128504,128505 2o0tA 467 68.61 2qm1A 326 68.63 2pr7A 137 69.33 2e18A 257 69.94 1jeyB 565 70.49 b.131.1.2,c.62.1.4 90372,90373 2olrA 540 70.55 c.91.1.1,c.109.1.1 139140,139141 2v5xA 388 72.29 2i3dA 249 74.11 1rkd 309 74.12 1rypA 243 74.98 d.153.1.4 41932 2bmxA 195 75.28 c.47.1.10 128817 1rypE 242 75.43 d.153.1.4 41936 1w36C 1122 75.46 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1hm9A 468 76.59 b.81.1.4,c.68.1.5 65866,65867 2basA 431 77.42 c.1.33.1,d.110.6.2 128244,128245 1vcoA 550 78.00 c.23.16.1,c.37.1.10 108508,108509 2zf5O 497 78.17 1oi4A 193 78.91 c.23.16.2 87047 1cl8A 276 78.98 c.52.1.1 33230 2v1xA 591 79.02 2os5A 119 79.83 1cjbA 231 80.63 c.61.1.1 34079 1m6iA 493 81.74 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1bu6O 501 82.21 c.55.1.4,c.55.1.4 33499,33500 2qwxA 231 83.15 1s2oA 244 83.54 c.108.1.10 118846 1t64A 377 83.83 c.42.1.2 106543 1io2A 213 84.51 c.55.3.1 62612 2veoA 441 85.86 1wy5A 317 85.94 c.26.2.5,d.229.1.1 121428,121429 1rkdA 309 86.43 c.72.1.1 34928 2omdA 154 87.33 1ctfA 74 87.81 d.45.1.1 38759 1ewqA 765 88.89 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743