# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 2.87e-30 c.55.3.10 120785 1u04A 771 5.95e-28 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 1.070 2ax4A 198 6.059 1rj9A 304 6.459 a.24.13.1,c.37.1.10 97553,97554 3b5eA 223 6.544 1tfr 305 7.898 2nxfA 322 8.043 1io2A 213 8.336 c.55.3.1 62612 2bgxA 261 9.126 a.20.1.1,d.118.1.1 128504,128505 1woqA 267 9.492 c.55.1.10,c.55.1.10 109462,109463 2pr7A 137 10.98 2hoqA 241 11.15 2ch5A 347 15.47 c.55.1.5,c.55.1.5 130453,130454 2c4nA 250 15.97 c.108.1.14 129837 1musA 477 16.18 c.55.3.4 79494 1f0yA 302 16.98 a.100.1.3,c.2.1.6 18793,30197 1wr8A 231 17.70 c.108.1.10 114836 1gudA 288 18.41 c.93.1.1 83326 1rypD 241 19.53 d.153.1.4 41935 1zc6A 305 20.31 c.55.1.5,c.55.1.5 124888,124889 1l7mA 211 20.85 c.108.1.4 73664 3bh0A 315 24.07 1rypF 233 24.33 d.153.1.4 41937 1a0dA 440 27.41 c.1.15.3 29533 2pezA 179 28.52 2pibA 216 28.92 2om6A 235 29.64 2hszA 243 29.99 c.108.1.6 136726 2veoA 441 30.92 1din 236 32.28 2nrrA 159 33.10 1bu8A 452 33.69 b.12.1.2,c.69.1.19 23647,34795 1q5qA 259 34.27 d.153.1.4 95904 1a0cA 438 35.67 c.1.15.3 29529 2vg2A 284 35.74 1l6rA 227 37.85 c.108.1.10 77768 2o8bB 1022 38.17 1yarA 233 38.66 d.153.1.4 122837 1t64A 377 38.98 c.42.1.2 106543 1zd3A 555 41.47 c.108.1.2,c.69.1.11 124930,124931 2yvuA 186 41.83 1zrnA 232 42.89 c.108.1.1 43323 2ou3A 161 42.94 1jmvA 141 43.57 c.26.2.4 66897 3co4A 312 44.33 3c8mA 331 44.67 1oneA 436 44.90 c.1.11.1,d.54.1.1 29200,38844 1yx1A 264 45.23 c.1.15.7 124169 1txuA 273 45.88 a.222.1.1 107439 1edg 380 45.96 1oe1A 336 46.61 b.6.1.3,b.6.1.3 86891,86892 2vsnA 568 48.56 3ce9A 354 49.40 1k94A 165 49.90 a.39.1.8 68333 1xpmA 396 52.18 c.95.1.2,c.95.1.2 115759,115760 1u4nA 310 52.78 c.69.1.2 113021 2hm7A 310 52.90 2pfsA 150 54.45 1g0uC 243 54.69 d.153.1.4 41948 2jbhA 225 56.95 3b9qA 302 57.59 2cw6A 298 58.24 1zi8A 236 60.21 2nteA 210 60.92 1k75A 434 60.98 c.82.1.2 68253 1wy5A 317 61.10 c.26.2.5,d.229.1.1 121428,121429 2vg3A 284 61.54 1rypB 250 61.82 d.153.1.4 41933 2z08A 137 62.92 1cl8A 276 64.94 c.52.1.1 33230 2ah5A 210 64.94 c.108.1.6 126742 1h9dB 134 65.91 b.54.1.1 60822 1exnA 290 65.99 a.60.7.1,c.120.1.2 18088,33358 1nq6A 302 66.97 c.1.8.3 92046 2v5xA 388 67.01 1tjyA 316 67.63 c.93.1.1 107062 2fvyA 309 69.01 c.93.1.1 134227 1nowA 507 70.33 c.1.8.6,d.92.2.1 85936,85937 8abp 306 70.93 2bmxA 195 71.72 c.47.1.10 128817 2no4A 240 72.54 1dpeA 507 74.37 c.94.1.1 35799 2gupA 292 75.57 c.55.1.10,c.55.1.10 135744,135745 1c3pA 375 76.04 c.42.1.2 32606 1rypG 244 77.15 d.153.1.4 41938 1om4A 422 78.24 d.174.1.1 87067 1yb0A 159 79.53 d.118.1.1 122865 2k0mA 104 79.56 2r8bA 251 80.07 1te2A 226 82.22 c.108.1.6 106792 2f7tA 227 82.94 2hi0A 240 83.46 2gm3A 175 85.88 c.26.2.4 135354 1alvA 173 85.91 a.39.1.8 17370 3cneA 175 86.15 2idoB 83 86.28 a.237.1.1 137285 1z6rA 406 86.33 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1wviA 257 86.66 c.108.1.14 114915 1o08A 221 87.91 c.108.1.6 86525 1l0bA 229 88.99 c.15.1.3,c.15.1.3 73391,73392