# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	5.97e-24	c.55.3.10	120785
1u04A	771	2.64e-23	b.34.14.1,c.55.3.10	107539,107540
1zc6A	305	1.611	c.55.1.5,c.55.1.5	124888,124889
2qh9A	184	1.677		
2ch5A	347	2.482	c.55.1.5,c.55.1.5	130453,130454
2qghA	425	7.717		
3b5eA	223	11.76		
1bu8A	452	11.79	b.12.1.2,c.69.1.19	23647,34795
1tfr	305	14.10		
1rypF	233	14.92	d.153.1.4	41937
1z6rA	406	24.28	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
2p3eA	420	24.56		
1g0uC	243	25.08	d.153.1.4	41948
2nrrA	159	25.45		
1yarA	233	25.50	d.153.1.4	122837
2hoeA	380	25.96	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
1l7mA	211	30.47	c.108.1.4	73664
2i71A	400	30.54		
1rypD	241	31.99	d.153.1.4	41935
1s3iA	310	32.63	b.46.1.1,c.65.1.1	98435,98436
1cl8A	276	33.36	c.52.1.1	33230
1rj9A	304	37.61	a.24.13.1,c.37.1.10	97553,97554
1wr8A	231	40.10	c.108.1.10	114836
2dxnA	274	40.12		
1oe1A	336	40.31	b.6.1.3,b.6.1.3	86891,86892
1cjbA	231	43.08	c.61.1.1	34079
2z08A	137	45.52		
1rypC	244	46.70	d.153.1.4	41934
2q0iA	303	48.94		
1xdzA	240	49.99	c.66.1.20	115196
1musA	477	50.10	c.55.3.4	79494
3bh0A	315	50.46		
1t64A	377	52.49	c.42.1.2	106543
1mpxA	615	52.69	b.18.1.13,c.69.1.21	85041,85042
1zd3A	555	54.10	c.108.1.2,c.69.1.11	124930,124931
1oz2A	331	58.83	b.34.9.3,b.34.9.3,b.34.9.3	93781,93782,93783
1io2A	213	59.64	c.55.3.1	62612
1yx1A	264	61.41	c.1.15.7	124169
2j66A	428	61.44		
1rypB	250	63.57	d.153.1.4	41933
2ax4A	198	64.08		
1thg	544	64.48		
1wqaA	455	64.92		
1woqA	267	65.43	c.55.1.10,c.55.1.10	109462,109463
1ryp1	222	66.28		
2vg2A	284	67.25		
2d1pA	140	68.00	c.114.1.1	131136
2o2gA	223	68.19		
2bgxA	261	69.88	a.20.1.1,d.118.1.1	128504,128505
1y56B	382	72.45		
1l6rA	227	72.88	c.108.1.10	77768
3ce9A	354	73.64		
2nxfA	322	76.05		
2gm3A	175	79.18	c.26.2.4	135354
1z7gA	217	80.92	c.61.1.1	124624
1eg7A	557	81.25	c.37.1.10	32241
2dplA	308	81.99		
2qm8A	337	82.15		
1i39A	225	82.97	c.55.3.1	61585
2prdA	174	84.00	b.40.5.1	25435
1ryp2	233	85.85		
1uwcA	261	86.67	c.69.1.17	100101
1xngA	268	87.17	c.26.2.1	122186
2ga9A	297	87.31	c.66.1.25	134885
2jbhA	225	89.15		
1rypI	222	89.40	d.153.1.4	41877