# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.74e-25 c.55.3.10 120785 1u04A 771 2.77e-24 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 1.489 1zc6A 305 2.611 c.55.1.5,c.55.1.5 124888,124889 2ch5A 347 3.282 c.55.1.5,c.55.1.5 130453,130454 3b5eA 223 7.199 2qghA 425 8.135 1bu8A 452 10.46 b.12.1.2,c.69.1.19 23647,34795 1tfr 305 12.82 2p3eA 420 15.87 1l7mA 211 18.75 c.108.1.4 73664 2nrrA 159 22.77 1rj9A 304 23.05 a.24.13.1,c.37.1.10 97553,97554 1musA 477 23.89 c.55.3.4 79494 1oe1A 336 23.91 b.6.1.3,b.6.1.3 86891,86892 2i71A 400 24.82 1wr8A 231 25.61 c.108.1.10 114836 1rypF 233 27.02 d.153.1.4 41937 2ax4A 198 29.80 3bh0A 315 30.84 1z6rA 406 31.31 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1cjbA 231 34.15 c.61.1.1 34079 1t64A 377 34.98 c.42.1.2 106543 1wqaA 455 35.30 1i39A 225 36.72 c.55.3.1 61585 2z08A 137 37.95 2ga9A 297 38.03 c.66.1.25 134885 1yarA 233 42.17 d.153.1.4 122837 2g3mA 693 42.78 2j66A 428 43.06 2q0iA 303 43.24 1cl8A 276 44.02 c.52.1.1 33230 1xdzA 240 44.03 c.66.1.20 115196 2o2gA 223 44.56 2hoeA 380 45.13 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2f2hA 773 48.14 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2qmjA 870 50.12 2dxnA 274 50.93 1eg7A 557 51.07 c.37.1.10 32241 1fj2A 232 53.23 c.69.1.14 34720 1zd3A 555 53.24 c.108.1.2,c.69.1.11 124930,124931 1io2A 213 53.45 c.55.3.1 62612 1wy5A 317 54.39 c.26.2.5,d.229.1.1 121428,121429 1l6rA 227 56.45 c.108.1.10 77768 2vg2A 284 57.98 1g0uC 243 58.19 d.153.1.4 41948 1mpxA 615 61.31 b.18.1.13,c.69.1.21 85041,85042 1fuiA 591 61.32 b.43.2.1,c.85.1.1 25674,35444 2gsoA 393 61.45 1yx1A 264 61.90 c.1.15.7 124169 1rypD 241 62.08 d.153.1.4 41935 2dplA 308 65.48 1rqbA 539 65.84 a.5.7.2,c.1.10.5 105057,105058 2pr7A 137 70.17 2dkaA 544 71.17 1xngA 268 72.45 c.26.2.1 122186 1woqA 267 73.73 c.55.1.10,c.55.1.10 109462,109463 2gm3A 175 75.64 c.26.2.4 135354 2basA 431 75.78 c.1.33.1,d.110.6.2 128244,128245 1z7gA 217 76.11 c.61.1.1 124624 2v5xA 388 76.71 2d1pA 140 76.80 c.114.1.1 131136 3ce9A 354 77.75 1rkqA 282 77.85 c.108.1.10 97621 1kqpA 271 77.85 c.26.2.1 72883 1s3iA 310 79.32 b.46.1.1,c.65.1.1 98435,98436 3cetA 334 80.28 2uytA 489 82.31 1o08A 221 82.89 c.108.1.6 86525 1nmsA 249 83.56 c.17.1.1 85879 1y56B 382 84.58 1hgxA 183 89.29 c.61.1.1 34027