# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 2.91e-32 c.55.3.10 120785 1u04A 771 1.45e-30 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 0.2080 2ch5A 347 3.312 c.55.1.5,c.55.1.5 130453,130454 1oe1A 336 5.085 b.6.1.3,b.6.1.3 86891,86892 1zc6A 305 5.447 c.55.1.5,c.55.1.5 124888,124889 1tfr 305 7.029 1rypF 233 7.252 d.153.1.4 41937 1rypD 241 10.79 d.153.1.4 41935 2ax4A 198 11.58 1bu8A 452 12.19 b.12.1.2,c.69.1.19 23647,34795 3b5eA 223 12.63 2qghA 425 16.00 1g0uC 243 17.28 d.153.1.4 41948 1oz2A 331 20.36 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1l7mA 211 20.69 c.108.1.4 73664 1yarA 233 22.18 d.153.1.4 122837 1rj9A 304 29.06 a.24.13.1,c.37.1.10 97553,97554 2i71A 400 29.26 1io2A 213 30.83 c.55.3.1 62612 1rypB 250 36.25 d.153.1.4 41933 1rqbA 539 37.02 a.5.7.2,c.1.10.5 105057,105058 2fsjA 346 38.16 c.55.1.12,c.55.1.12 134025,134026 2o2gA 223 38.66 1a5zA 319 38.83 c.2.1.5,d.162.1.1 30181,42148 1rypC 244 38.96 d.153.1.4 41934 1cjbA 231 39.65 c.61.1.1 34079 1zd3A 555 41.31 c.108.1.2,c.69.1.11 124930,124931 2dplA 308 42.77 1cl8A 276 44.80 c.52.1.1 33230 2hm7A 310 45.60 1zdsA 336 45.82 b.6.1.3,b.6.1.3 124952,124953 2p0kA 212 46.97 2nrrA 159 47.46 2ih8A 559 48.56 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 3co4A 312 50.10 1u4nA 310 53.55 c.69.1.2 113021 1mpxA 615 54.29 b.18.1.13,c.69.1.21 85041,85042 2r58A 265 55.16 1xdzA 240 56.82 c.66.1.20 115196 1ex2A 189 57.39 c.51.4.2 33225 2gupA 292 57.46 c.55.1.10,c.55.1.10 135744,135745 1uehA 253 58.63 c.101.1.1 99259 1wy5A 317 59.71 c.26.2.5,d.229.1.1 121428,121429 1mhmA 288 60.62 1musA 477 61.10 c.55.3.4 79494 2g3mA 693 61.14 1b8oA 284 63.99 c.56.2.1 33762 2vg2A 284 65.16 2v7pA 310 66.03 3bh0A 315 69.09 1y56B 382 70.99 2pezA 179 71.19 1z7gA 217 71.21 c.61.1.1 124624 1rypG 244 71.45 d.153.1.4 41938 3bv8A 87 75.64 1fn9A 365 76.32 d.196.1.1 59894 1wr8A 231 78.57 c.108.1.10 114836 1wd5A 208 79.93 c.61.1.1 114524 1i39A 225 81.52 c.55.3.1 61585 1yx1A 264 81.97 c.1.15.7 124169 1a0dA 440 81.97 c.1.15.3 29533 1q5qA 259 82.42 d.153.1.4 95904 1eg7A 557 82.97 c.37.1.10 32241 2q0iA 303 83.67 1woqA 267 84.43 c.55.1.10,c.55.1.10 109462,109463 1xngA 268 87.48 c.26.2.1 122186