# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 4.30e-27 c.55.3.10 120785 1u04A 771 1.95e-25 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 1.137 1tfr 305 5.235 1bu8A 452 5.383 b.12.1.2,c.69.1.19 23647,34795 1rypF 233 5.961 d.153.1.4 41937 1zc6A 305 7.325 c.55.1.5,c.55.1.5 124888,124889 1rypD 241 9.361 d.153.1.4 41935 3b5eA 223 11.37 2ch5A 347 12.76 c.55.1.5,c.55.1.5 130453,130454 2ax4A 198 14.01 1l7mA 211 14.40 c.108.1.4 73664 1yarA 233 14.76 d.153.1.4 122837 1mpxA 615 14.90 b.18.1.13,c.69.1.21 85041,85042 1rypC 244 17.05 d.153.1.4 41934 1g0uC 243 19.92 d.153.1.4 41948 1wr8A 231 21.10 c.108.1.10 114836 2nrrA 159 23.40 1zd3A 555 23.89 c.108.1.2,c.69.1.11 124930,124931 1oe1A 336 24.16 b.6.1.3,b.6.1.3 86891,86892 1rypB 250 25.23 d.153.1.4 41933 1u4nA 310 28.01 c.69.1.2 113021 2qghA 425 28.78 2hm7A 310 30.33 1xdzA 240 30.60 c.66.1.20 115196 1io2A 213 32.55 c.55.3.1 62612 2o2gA 223 34.11 1cl8A 276 34.30 c.52.1.1 33230 1hplA 449 41.83 b.12.1.2,c.69.1.19 23639,34787 2p3eA 420 43.39 2i71A 400 44.69 2dplA 308 49.91 1mhmA 288 51.59 1rypA 243 52.39 d.153.1.4 41932 2pezA 179 53.85 2bgxA 261 54.30 a.20.1.1,d.118.1.1 128504,128505 1l6rA 227 65.29 c.108.1.10 77768 1fj2A 232 65.79 c.69.1.14 34720 3bv8A 87 68.77 2pr7A 137 69.23 1rj9A 304 69.97 a.24.13.1,c.37.1.10 97553,97554 1musA 477 70.76 c.55.3.4 79494 1xngA 268 71.20 c.26.2.1 122186 1z08A 170 72.47 c.37.1.8 124303 1uehA 253 74.62 c.101.1.1 99259 2zodA 345 75.09 1s2oA 244 77.78 c.108.1.10 118846 1rypG 244 79.58 d.153.1.4 41938 2nteA 210 81.06 1kqpA 271 82.35 c.26.2.1 72883 2vg2A 284 82.60 1a5zA 319 84.01 c.2.1.5,d.162.1.1 30181,42148 1cjbA 231 84.17 c.61.1.1 34079 1thg 544 84.77 2gupA 292 84.94 c.55.1.10,c.55.1.10 135744,135745 1woqA 267 85.35 c.55.1.10,c.55.1.10 109462,109463 2fsjA 346 85.69 c.55.1.12,c.55.1.12 134025,134026 1zdsA 336 86.29 b.6.1.3,b.6.1.3 124952,124953 1yb0A 159 87.72 d.118.1.1 122865