# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 4.31e-29 c.55.3.10 120785 1u04A 771 4.37e-27 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 0.7034 1bu8A 452 4.057 b.12.1.2,c.69.1.19 23647,34795 1zc6A 305 4.516 c.55.1.5,c.55.1.5 124888,124889 2ch5A 347 5.077 c.55.1.5,c.55.1.5 130453,130454 1tfr 305 6.719 1rypF 233 7.415 d.153.1.4 41937 2ax4A 198 7.733 3b5eA 223 8.560 1yarA 233 9.704 d.153.1.4 122837 1rypD 241 11.49 d.153.1.4 41935 1rypC 244 16.54 d.153.1.4 41934 2nrrA 159 16.95 1g0uC 243 17.05 d.153.1.4 41948 1rypB 250 18.00 d.153.1.4 41933 1io2A 213 20.43 c.55.3.1 62612 1l7mA 211 22.02 c.108.1.4 73664 1wr8A 231 23.81 c.108.1.10 114836 1zd3A 555 24.52 c.108.1.2,c.69.1.11 124930,124931 2qghA 425 24.92 1rj9A 304 26.00 a.24.13.1,c.37.1.10 97553,97554 1oe1A 336 27.11 b.6.1.3,b.6.1.3 86891,86892 1xdzA 240 28.41 c.66.1.20 115196 2p3eA 420 28.66 1cl8A 276 29.72 c.52.1.1 33230 2pezA 179 30.18 1thg 544 35.29 2dplA 308 36.16 2o2gA 223 36.42 1fj2A 232 37.30 c.69.1.14 34720 1y56B 382 37.89 1woqA 267 38.10 c.55.1.10,c.55.1.10 109462,109463 1mpxA 615 39.48 b.18.1.13,c.69.1.21 85041,85042 2g3mA 693 46.13 1mhmA 288 46.77 1eg7A 557 49.17 c.37.1.10 32241 1w36C 1122 50.80 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1hplA 449 52.09 b.12.1.2,c.69.1.19 23639,34787 2hm7A 310 52.67 1i39A 225 56.19 c.55.3.1 61585 1rypG 244 56.82 d.153.1.4 41938 1a5zA 319 58.17 c.2.1.5,d.162.1.1 30181,42148 2uytA 489 58.52 1rypA 243 58.62 d.153.1.4 41932 1rypH 205 59.34 d.153.1.4 41876 2qmjA 870 60.38 2gupA 292 60.39 c.55.1.10,c.55.1.10 135744,135745 1o08A 221 63.02 c.108.1.6 86525 1rqbA 539 64.72 a.5.7.2,c.1.10.5 105057,105058 1xngA 268 65.86 c.26.2.1 122186 3bv8A 87 66.32 2zodA 345 66.36 2prdA 174 66.91 b.40.5.1 25435 1s3iA 310 67.29 b.46.1.1,c.65.1.1 98435,98436 1u4nA 310 67.67 c.69.1.2 113021 1ex2A 189 69.00 c.51.4.2 33225 1cjbA 231 72.78 c.61.1.1 34079 1z08A 170 72.80 c.37.1.8 124303 1m0dA 138 73.37 c.52.1.17 74354 1t64A 377 74.62 c.42.1.2 106543 1s2oA 244 76.15 c.108.1.10 118846 1jeyB 565 78.32 b.131.1.2,c.62.1.4 90372,90373 1twlA 186 80.12 b.40.5.1 112764 1musA 477 80.78 c.55.3.4 79494 1yx1A 264 81.95 c.1.15.7 124169 2r01A 210 82.15 1h70A 255 84.94 d.126.1.3 60711 1uehA 253 84.96 c.101.1.1 99259 2nteA 210 85.28 2veoA 441 85.87 2pr7A 137 88.00 2r8bA 251 89.04