# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.25e-23 c.55.3.10 120785 1u04A 771 2.33e-22 b.34.14.1,c.55.3.10 107539,107540 1rypD 241 3.056 d.153.1.4 41935 2ax4A 198 3.716 1rypF 233 4.599 d.153.1.4 41937 2qh9A 184 5.428 1a0cA 438 7.785 c.1.15.3 29529 1woqA 267 8.251 c.55.1.10,c.55.1.10 109462,109463 2pr7A 137 8.351 1yarA 233 10.28 d.153.1.4 122837 3b5eA 223 10.92 1qq5A 253 10.98 c.108.1.1 43327 1o08A 221 11.10 c.108.1.6 86525 1l7mA 211 12.76 c.108.1.4 73664 2ah5A 210 13.58 c.108.1.6 126742 1t64A 377 14.25 c.42.1.2 106543 1c3pA 375 15.91 c.42.1.2 32606 1s2oA 244 16.54 c.108.1.10 118846 1fuiA 591 16.62 b.43.2.1,c.85.1.1 25674,35444 1p1jA 533 16.84 c.2.1.3,d.81.1.3 87687,87688 2ebn 289 17.41 1rypA 243 18.58 d.153.1.4 41932 1a0dA 440 19.36 c.1.15.3 29533 1rj9A 304 19.44 a.24.13.1,c.37.1.10 97553,97554 2v5xA 388 19.51 1q5qA 259 19.90 d.153.1.4 95904 2hszA 243 20.81 c.108.1.6 136726 1oe1A 336 21.38 b.6.1.3,b.6.1.3 86891,86892 1g0uC 243 24.38 d.153.1.4 41948 2nxfA 322 25.93 1rypB 250 26.12 d.153.1.4 41933 2cftA 298 26.82 2hi0A 240 26.84 1io2A 213 27.00 c.55.3.1 62612 2j66A 428 28.34 1musA 477 30.22 c.55.3.4 79494 2qghA 425 30.39 2pezA 179 32.82 1tfr 305 32.92 2z08A 137 32.93 2bmxA 195 35.56 c.47.1.10 128817 2apjA 260 37.69 c.23.10.7 127128 1zrnA 232 37.73 c.108.1.1 43323 1f0yA 302 41.61 a.100.1.3,c.2.1.6 18793,30197 2feaA 236 42.43 c.108.1.20 133327 1oneA 436 42.88 c.1.11.1,d.54.1.1 29200,38844 1te2A 226 43.00 c.108.1.6 106792 1x42A 232 44.13 c.108.1.1 121677 2bgxA 261 44.38 a.20.1.1,d.118.1.1 128504,128505 1zc6A 305 49.98 c.55.1.5,c.55.1.5 124888,124889 3cneA 175 52.24 2o0tA 467 54.19 3c10A 423 54.29 1twiA 434 55.42 b.49.2.3,c.1.6.1 107399,107400 3cnhA 200 56.85 2hoqA 241 59.27 1yslA 402 60.23 1xpmA 396 60.40 c.95.1.2,c.95.1.2 115759,115760 1an9A 340 60.50 c.4.1.2,d.16.1.3 30617,37904 1rypC 244 61.53 d.153.1.4 41934 2nrrA 159 62.00 2i6xA 211 62.70 2gm3A 175 63.07 c.26.2.4 135354 1rypG 244 63.53 d.153.1.4 41938 1kyhA 276 65.20 c.72.1.4 73222 1xpkC 388 69.41 c.95.1.2,c.95.1.2 115747,115748 2om6A 235 70.54 1yp2A 451 71.12 b.81.1.4,c.68.1.6 123798,123799 1ekeA 230 71.68 c.55.3.1 33572 2pibA 216 71.86 1hfeL 421 72.78 c.96.1.1,d.58.1.5 36018,39001 1wjgA 137 73.39 c.26.2.4 114696 1l6rA 227 73.57 c.108.1.10 77768 2q2rA 373 74.58 1k94A 165 76.32 a.39.1.8 68333 1lvlA 458 76.74 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1tcvA 287 77.23 2obwA 258 78.87 1z6rA 406 81.08 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2b0cA 206 81.36 c.108.1.2 127633 1hh1A 143 81.58 c.52.1.18 61036 1i39A 225 82.76 c.55.3.1 61585 2d0bA 310 83.48