# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.44e-23 c.55.3.10 120785 1u04A 771 3.25e-23 b.34.14.1,c.55.3.10 107539,107540 2ch5A 347 2.040 c.55.1.5,c.55.1.5 130453,130454 1woqA 267 5.177 c.55.1.10,c.55.1.10 109462,109463 1rypD 241 5.685 d.153.1.4 41935 1tfr 305 5.738 2qh9A 184 6.427 1t64A 377 7.857 c.42.1.2 106543 1kyhA 276 8.717 c.72.1.4 73222 1oe1A 336 9.507 b.6.1.3,b.6.1.3 86891,86892 1io2A 213 10.79 c.55.3.1 62612 2qghA 425 12.24 2p3rA 510 12.47 c.55.1.4,c.55.1.4 139471,139472 2apjA 260 14.21 c.23.10.7 127128 2nxfA 322 15.97 3be7A 408 16.71 1rypF 233 16.78 d.153.1.4 41937 1a0cA 438 17.87 c.1.15.3 29529 1g0uC 243 18.32 d.153.1.4 41948 2zf5O 497 18.98 1bu6O 501 19.78 c.55.1.4,c.55.1.4 33499,33500 1mpxA 615 20.00 b.18.1.13,c.69.1.21 85041,85042 1rypB 250 20.80 d.153.1.4 41933 2ivnA 330 21.41 1z6rA 406 22.69 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1ekeA 230 23.93 c.55.3.1 33572 2v5xA 388 26.21 2pr7A 137 27.55 1zc6A 305 28.92 c.55.1.5,c.55.1.5 124888,124889 1uuqA 440 28.95 c.1.8.3 100015 1musA 477 29.01 c.55.3.4 79494 2gupA 292 29.48 c.55.1.10,c.55.1.10 135744,135745 1l7mA 211 30.08 c.108.1.4 73664 1c3pA 375 30.09 c.42.1.2 32606 1zdsA 336 30.53 b.6.1.3,b.6.1.3 124952,124953 2jbwA 386 31.40 2j66A 428 31.64 2o0tA 467 31.84 1i39A 225 32.69 c.55.3.1 61585 2hoeA 380 34.39 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1rypC 244 34.82 d.153.1.4 41934 2ebn 289 35.28 2q2rA 373 35.82 2q9oA 559 36.42 2cmdA 312 39.14 c.2.1.5,d.162.1.1 30135,42102 2z26A 347 39.18 1hm9A 468 40.51 b.81.1.4,c.68.1.5 65866,65867 3b5eA 223 42.12 3c8mA 331 42.30 1thg 544 42.96 2ih8A 559 44.22 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2qeeA 437 44.45 1wy5A 317 44.85 c.26.2.5,d.229.1.1 121428,121429 2ax4A 198 45.73 2q8uA 336 46.02 1thgA 544 46.40 c.69.1.17 34763 2uytA 489 49.86 1yarA 233 51.69 d.153.1.4 122837 2d4wA 504 52.93 1r59O 505 53.90 c.55.1.4,c.55.1.4 111697,111698 1rypA 243 54.62 d.153.1.4 41932 1l6rA 227 57.42 c.108.1.10 77768 1xo1A 291 59.83 a.60.7.1,c.120.1.2 18086,33356 1vcoA 550 60.07 c.23.16.1,c.37.1.10 108508,108509 1t8sA 484 60.49 c.56.2.1 106679 2nteA 210 62.82 1nmsA 249 63.95 c.17.1.1 85879 1rj9A 304 64.01 a.24.13.1,c.37.1.10 97553,97554 2gm3A 175 64.95 c.26.2.4 135354 1w4xA 542 65.37 c.3.1.5,c.3.1.5 109171,109172 2pfsA 150 65.67 1a0dA 440 65.85 c.1.15.3 29533 1nowA 507 66.70 c.1.8.6,d.92.2.1 85936,85937 1s3iA 310 67.09 b.46.1.1,c.65.1.1 98435,98436 2z08A 137 67.99 3d8kA 377 68.05 2nrrA 159 69.16 1muwA 386 69.84 c.1.15.3 79495 2q18X 293 71.65 1cfzA 162 74.25 c.56.1.1 33754 3bh0A 315 74.97 1jeyB 565 77.39 b.131.1.2,c.62.1.4 90372,90373 2ebnA 289 77.98 c.1.8.5 28990 1q5qA 259 80.22 d.153.1.4 95904 1zbsA 291 81.85 c.55.1.5,c.55.1.5 124870,124871 2etjA 250 82.13 c.55.3.1 132360 1o08A 221 82.67 c.108.1.6 86525 2ajrA 331 82.95 c.72.1.1 126892 2p3eA 420 85.38 2qx2A 344 88.60