# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 4.26e-14 c.55.3.10 120785 1u04A 771 6.86e-12 b.34.14.1,c.55.3.10 107539,107540 2ap1A 327 1.064 c.55.1.10,c.55.1.10 127108,127109 2ch5A 347 2.121 c.55.1.5,c.55.1.5 130453,130454 2qm1A 326 2.387 2gelA 231 2.615 2p3rA 510 2.966 c.55.1.4,c.55.1.4 139471,139472 1y8cA 246 3.265 c.66.1.43 116563 2d4wA 504 3.896 2ax4A 198 4.279 2qh9A 184 4.434 1zc6A 305 4.674 c.55.1.5,c.55.1.5 124888,124889 1i39A 225 5.132 c.55.3.1 61585 1io2A 213 5.187 c.55.3.1 62612 2yvuA 186 6.325 1rkdA 309 6.435 c.72.1.1 34928 1td2A 287 6.436 c.72.1.5 106765 1huxA 270 6.813 c.55.1.5 61278 2pezA 179 6.960 2hoeA 380 6.999 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2h3gX 268 8.203 2ivnA 330 8.816 2aa4A 289 9.884 c.55.1.10,c.55.1.10 126465,126466 1woqA 267 11.06 c.55.1.10,c.55.1.10 109462,109463 1v4sA 455 11.80 c.55.1.3,c.55.1.3 100309,100310 1e4fT 419 12.27 c.55.1.1,c.55.1.1 33453,33454 1bu6O 501 12.89 c.55.1.4,c.55.1.4 33499,33500 2uytA 489 13.51 2zf5O 497 13.59 2etjA 250 14.33 c.55.3.1 132360 1z6rA 406 14.67 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2itmA 484 14.67 1rkd 309 15.06 2ddmA 283 15.22 2e2oA 299 16.21 1x6vA 630 20.65 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3c61A 314 21.69 1bx4A 345 22.63 c.72.1.1 34935 1jcfA 344 23.13 c.55.1.1,c.55.1.1 62878,62879 1hjrA 158 23.63 c.55.3.6 33727 2f7kA 327 24.56 2yxtA 312 25.58 2d0bA 310 26.31 1bupA 386 26.63 c.55.1.1,c.55.1.1 33377,33378 1zbsA 291 27.56 c.55.1.5,c.55.1.5 124870,124871 3cerA 343 31.24 1ekeA 230 35.11 c.55.3.1 33572 1t6cA 315 36.10 c.55.1.8,c.55.1.8 106558,106559 1ig8A 486 37.11 c.55.1.3,c.55.1.3 64746,64747 1sviA 195 37.81 c.37.1.8 106048 1xdpA 687 38.03 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1r1dA 247 38.24 c.69.1.29 96813 1lhpA 312 40.06 c.72.1.5 77960 2qrvA 295 44.13 1acfA 125 44.33 d.110.1.1 40882 2q1sA 377 44.46 1zkdA 387 44.60 c.66.1.52 125184 1vqoB 338 46.19 b.43.3.2 120363 1vi9A 299 48.12 c.72.1.5 100750 2a6aA 218 49.63 c.55.1.9,c.55.1.9 126231,126232 1p9bA 442 51.64 c.37.1.10 94385 1dqpA 230 52.05 c.61.1.1 34069 3bexA 249 52.77 1vm7A 311 53.01 c.72.1.1 108884 1om4A 422 54.01 d.174.1.1 87067 2oo6A 409 54.71 1u6zA 513 55.05 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ub0A 258 56.47 c.72.1.2 88394 1rhs 296 56.74 2fv7A 331 58.07 c.72.1.1 134197 2nvaA 372 58.26 2hrzA 342 58.56 1acf 125 61.03 3cqyA 370 61.27 1zy9A 564 61.31 b.30.5.11,c.1.8.13 125813,125814 2i6qA 517 62.75 1iweA 457 63.37 c.37.1.10 71486 2qhpA 296 64.47 1rrvA 416 65.48 c.87.1.5 105083 3cj1A 456 66.20 1xc3A 302 66.49 c.55.1.10,c.55.1.10 115102,115103 2p3eA 420 70.24 2e6fA 314 70.48 1qahA 136 72.62 d.79.1.1 96338 2nrrA 159 73.54 1xo1A 291 73.65 a.60.7.1,c.120.1.2 18086,33356 1xw8A 252 73.79 c.6.2.5 116111 1uk8A 282 73.83 c.69.1.10 107907 2gtdA 251 74.12 c.55.1.13,c.55.1.13 135634,135635 2qdkA 252 75.58 1ct9A 553 76.15 c.26.2.1,d.153.1.1 31616,41834 2ha9A 446 76.59 3b5eA 223 77.01 1oc2A 348 79.44 c.2.1.2 92765 1qf5A 431 80.14 c.37.1.10 32212 1p1jA 533 80.34 c.2.1.3,d.81.1.3 87687,87688 2f7tA 227 80.60 2odpA 509 80.88 1t15A 214 81.29 c.15.1.3,c.15.1.3 99067,99068 2z5lA 511 81.49 2q2rA 373 82.31 1m3kA 392 82.87 c.95.1.1,c.95.1.1 78565,78566 1jd1A 129 83.31 d.79.1.1 62890 1jubA 311 85.14 c.1.4.1 90908 2o4cA 380 85.48 1s3eA 520 85.59 c.3.1.2,d.16.1.5 98426,98427 2uy2A 294 88.86 2gupA 292 89.64 c.55.1.10,c.55.1.10 135744,135745