Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	1.2773e-32	1u04A/T0487-1u04A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1w9hA	7.9913e-27	1w9hA/T0487-1w9hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
2qh9A	2.9436e-02	2qh9A/T0487-2qh9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zc6A	1.2944e+00	1zc6A/T0487-1zc6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5 c.55.1.5
1rypD	1.2252e+01	1rypD/T0487-1rypD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
2ax4A	1.8324e+01	2ax4A/T0487-2ax4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nrrA	2.3933e+01	2nrrA/T0487-2nrrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e2oA	2.6673e+01	2e2oA/T0487-2e2oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rypF	3.0760e+01	1rypF/T0487-1rypF-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
1g0uC	3.2245e+01	1g0uC/T0487-1g0uC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
1rypB	3.4530e+01	1rypB/T0487-1rypB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.153.1.4
1kypA	3.7708e+01	1kypA/T0487-1kypA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oxdA	3.8103e+01	1oxdA/T0487-1oxdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2awkA	3.9257e+01	2awkA/T0487-2awkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n25A	4.1892e+01	1n25A/T0487-1n25A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tfrA	4.3024e+01	1tfrA/T0487-1tfrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.7.1 c.120.1.2
1ojqA	4.6005e+01	1ojqA/T0487-1ojqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.166.1.1
1ema	4.7748e+01	1ema/T0487-1ema-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o7rA	4.7927e+01	2o7rA/T0487-2o7rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1e4fT	4.9542e+01	1e4fT/T0487-1e4fT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.1 c.55.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001