# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.15e-28 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.71e-26 c.55.3.10 120785 1zc6A 305 0.1068 c.55.1.5,c.55.1.5 124888,124889 2qh9A 184 0.1133 1rypD 241 15.39 d.153.1.4 41935 2ax4A 198 18.19 1yqzA 438 19.06 2vfxA 206 19.22 1rypF 233 20.77 d.153.1.4 41937 1f75A 249 21.48 c.101.1.1 59662 1l6rA 227 22.40 c.108.1.10 77768 2e2oA 299 22.98 1tfrA 305 24.19 a.60.7.1,c.120.1.2 18081,33351 1auk 489 25.83 1cl8A 276 27.13 c.52.1.1 33230 1uozA 315 27.70 c.6.1.1 113354 2bqxA 173 27.89 2nrrA 159 28.35 1v4sA 455 29.78 c.55.1.3,c.55.1.3 100309,100310 1uehA 253 30.10 c.101.1.1 99259 1fzrA 138 31.20 c.52.1.17 33336 1musA 477 32.52 c.55.3.4 79494 1zkdA 387 33.04 c.66.1.52 125184 2v3vA 723 38.84 1ru8A 232 42.38 c.26.2.1 97849 1wb9A 800 44.45 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 3cerA 343 48.99 2napA 723 51.17 b.52.2.2,c.81.1.1 26926,35334 2q8kA 401 51.25 1p5dX 463 51.48 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fuvA 549 51.57 1s2oA 244 51.70 c.108.1.10 118846 1m0dA 138 53.03 c.52.1.17 74354 1q9jA 422 55.09 c.43.1.2,c.43.1.2 104590,104591 1r45A 204 55.53 d.166.1.1 111683 1c8bA 371 56.59 c.56.1.2 59082 1kqpA 271 56.73 c.26.2.1 72883 1g0uC 243 58.37 d.153.1.4 41948 1xkpC 143 59.62 d.198.1.1 122088 1k2yX 463 60.42 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2j66A 428 60.93 1s3iA 310 61.42 b.46.1.1,c.65.1.1 98435,98436 2mbrA 340 62.02 d.145.1.2,d.146.1.1 41749,41762 1g0uG 252 62.55 d.153.1.4 41952 1z7gA 217 62.83 c.61.1.1 124624 2pezA 179 63.38 1ojqA 212 66.66 d.166.1.1 93146 1rypH 205 67.12 d.153.1.4 41876 2yhx 457 68.02 1sxvA 172 68.72 1j97A 211 68.93 c.108.1.4 62753 2gqwA 408 70.74 1e4fT 419 71.33 c.55.1.1,c.55.1.1 33453,33454 2ohcA 289 72.87 2basA 431 74.12 c.1.33.1,d.110.6.2 128244,128245 1bu6O 501 74.48 c.55.1.4,c.55.1.4 33499,33500 1nhpA 447 74.58 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1vfsA 386 74.75 b.49.2.2,c.1.6.1 108584,108585 1mpxA 615 75.01 b.18.1.13,c.69.1.21 85041,85042 1uf3A 228 77.18 d.159.1.6 99317 1xewY 172 78.07 2iw1A 374 80.19 c.87.1.8 137738 1poiA 317 80.87 c.124.1.2 34153 1nw3A 416 81.22 c.66.1.31 86288 2yhxA 457 82.96 i.12.1.1 46024 1uxyA 340 83.42 d.145.1.2,d.146.1.1 41748,41761 2acvA 463 84.27 3bijA 285 84.35 2qghA 425 88.86