# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.03e-28 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.01e-26 c.55.3.10 120785 1zc6A 305 0.09458 c.55.1.5,c.55.1.5 124888,124889 2qh9A 184 0.3861 1rypD 241 0.6893 d.153.1.4 41935 1tfrA 305 2.471 a.60.7.1,c.120.1.2 18081,33351 1g0uC 243 2.934 d.153.1.4 41948 1wb9A 800 3.057 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1rypF 233 3.430 d.153.1.4 41937 1kqpA 271 3.707 c.26.2.1 72883 1e3mA 800 4.804 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1yarA 233 5.565 d.153.1.4 122837 1g0uG 252 7.581 d.153.1.4 41952 1rypA 243 8.967 d.153.1.4 41932 2ax4A 198 9.432 1rypC 244 10.82 d.153.1.4 41934 1uf3A 228 11.96 d.159.1.6 99317 2cmuA 342 12.15 1ru8A 232 13.56 c.26.2.1 97849 2zd1A 557 14.00 2napA 723 14.02 b.52.2.2,c.81.1.1 26926,35334 2v3vA 723 14.36 1rypB 250 14.56 d.153.1.4 41933 1rypH 205 15.34 d.153.1.4 41876 1tfr 305 19.06 1nnwA 252 19.76 d.159.1.5 80674 1knwA 425 22.21 b.49.2.3,c.1.6.1 90969,90970 2o0tA 467 23.33 2d1sA 548 24.22 1ewqA 765 25.30 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2pezA 179 26.71 2nrrA 159 27.79 2yv5A 302 27.79 1k2yX 463 31.02 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1f75A 249 31.30 c.101.1.1 59662 1p5dX 463 31.61 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2iw1A 374 32.70 c.87.1.8 137738 2q3uA 383 32.72 d.126.1.6 139809 1s3iA 310 34.05 b.46.1.1,c.65.1.1 98435,98436 1z7gA 217 34.30 c.61.1.1 124624 2geyA 158 35.58 1vrtA 560 36.00 c.55.3.1,e.8.1.2 33574,43023 3be4A 217 36.19 1l6rA 227 36.27 c.108.1.10 77768 2a9kB 223 39.71 d.166.1.1 126443 2qghA 425 40.63 1g0uL 241 41.69 d.153.1.4 41894 1wqaA 455 41.80 1r45A 204 41.98 d.166.1.1 111683 2vg2A 284 42.08 1rthA 560 43.68 c.55.3.1,e.8.1.2 33576,43028 1uehA 253 44.21 c.101.1.1 99259 2mbrA 340 45.01 d.145.1.2,d.146.1.1 41749,41762 2a22A 215 45.63 d.159.1.7 126025 1rypG 244 46.36 d.153.1.4 41938 2o8bB 1022 47.65 1q9jA 422 50.12 c.43.1.2,c.43.1.2 104590,104591 1cl8A 276 51.48 c.52.1.1 33230 2ch5A 347 51.58 c.55.1.5,c.55.1.5 130453,130454 1j97A 211 51.64 c.108.1.4 62753 2vfxA 206 51.78 2omdA 154 51.95 1e4fT 419 53.53 c.55.1.1,c.55.1.1 33453,33454 2pljA 419 57.17 1zinA 217 57.66 c.37.1.1,g.41.2.1 31915,45178 1uxyA 340 57.90 d.145.1.2,d.146.1.1 41748,41761 1g61A 228 59.25 d.126.1.1 41126 1yuwA 554 60.35 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2j66A 428 62.57 2pqpA 421 62.61 1vkpA 383 63.05 d.126.1.6 108686 2fuvA 549 63.88 2e7zA 727 65.54 2hoqA 241 68.94 1z85A 234 69.41 1uozA 315 69.91 c.6.1.1 113354 2cghA 268 71.77 1a3c 181 72.28 2p38A 166 72.85 1wmhA 89 75.60 d.15.2.2 114744 1bbpA 173 76.09 b.60.1.1 27147 1rypK 198 76.26 d.153.1.4 41879 2jerA 389 77.36 3bijA 285 77.46 1vqzA 341 80.96 d.224.1.3,d.104.1.3 120426,120427 1ojqA 212 81.57 d.166.1.1 93146 2vg3A 284 81.58 1ryp1 222 82.61 1z2wA 192 84.31 d.159.1.7 124390 1ob8A 135 84.87 c.52.1.18 111627 1s14A 194 85.08 d.122.1.2 98329 1zin 217 85.98 1yqzA 438 86.28 1aj2 282 86.30