# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 8.13e-32 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.84e-29 c.55.3.10 120785 1zc6A 305 0.07280 c.55.1.5,c.55.1.5 124888,124889 2qh9A 184 0.08599 1rypD 241 3.058 d.153.1.4 41935 1rypF 233 3.318 d.153.1.4 41937 2ax4A 198 3.955 1g0uC 243 6.559 d.153.1.4 41948 2vfxA 206 11.99 1yarA 233 14.49 d.153.1.4 122837 1uehA 253 15.37 c.101.1.1 99259 1tfrA 305 16.17 a.60.7.1,c.120.1.2 18081,33351 1kqpA 271 18.81 c.26.2.1 72883 1rypG 244 21.37 d.153.1.4 41938 1e3mA 800 21.84 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1g0uG 252 22.21 d.153.1.4 41952 1rypB 250 23.40 d.153.1.4 41933 1rypC 244 23.42 d.153.1.4 41934 1wb9A 800 25.58 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1f75A 249 25.84 c.101.1.1 59662 2e2oA 299 27.51 1q9jA 422 28.91 c.43.1.2,c.43.1.2 104590,104591 2q8kA 401 29.28 1fzrA 138 29.80 c.52.1.17 33336 1xkpC 143 30.01 d.198.1.1 122088 1rypA 243 30.21 d.153.1.4 41932 1rypH 205 30.52 d.153.1.4 41876 1bi5A 389 30.88 c.95.1.2,c.95.1.2 35985,35986 1l6rA 227 31.23 c.108.1.10 77768 1cl8A 276 33.16 c.52.1.1 33230 1m0dA 138 34.22 c.52.1.17 74354 2napA 723 35.07 b.52.2.2,c.81.1.1 26926,35334 1ru8A 232 36.15 c.26.2.1 97849 2iw1A 374 37.37 c.87.1.8 137738 1s2oA 244 38.51 c.108.1.10 118846 1musA 477 40.84 c.55.3.4 79494 2cghA 268 41.13 1yqzA 438 41.28 2bqxA 173 44.71 1ojqA 212 45.88 d.166.1.1 93146 2ohcA 289 49.47 2v3vA 723 49.59 1lwjA 441 50.82 b.71.1.1,c.1.8.1 74303,74304 1poiA 317 52.81 c.124.1.2 34153 1khvA 516 55.19 e.8.1.4 68627 1gtdA 85 55.26 d.284.1.1 76344 2uyzB 79 55.85 d.15.1.1 140039 1ldg 316 56.30 1ex2A 189 57.40 c.51.4.2 33225 2pezA 179 58.35 2o0tA 467 59.34 1i88A 389 60.66 c.95.1.2,c.95.1.2 66070,66071 1rhfA 182 61.98 b.1.1.1,b.1.1.4 97469,97470 2e7zA 727 63.01 1nw3A 416 64.73 c.66.1.31 86288 2zd1A 557 66.24 2a22A 215 68.78 d.159.1.7 126025 1p5dX 463 71.59 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2ou3A 161 71.77 1v4sA 455 71.78 c.55.1.3,c.55.1.3 100309,100310 1fsiA 189 72.10 d.61.1.1 39536 1yb0A 159 72.44 d.118.1.1 122865 1zkdA 387 75.73 c.66.1.52 125184 1m7gA 211 77.91 c.37.1.4 78724 1v5xA 203 77.96 c.1.2.4 100377 1k2yX 463 78.03 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1uozA 315 81.36 c.6.1.1 113354 2o3hA 285 82.82 1ukcA 522 83.66 c.69.1.17 107911 2d2jA 329 83.84 c.1.9.3 131175 1u58A 253 84.80 1z7gA 217 87.67 c.61.1.1 124624 2gj4A 824 88.65 c.87.1.4 135256 1ei6A 406 89.21 c.76.1.4 90443