# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 3.67e-27 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.75e-26 c.55.3.10 120785 2qh9A 184 0.4908 1zc6A 305 2.875 c.55.1.5,c.55.1.5 124888,124889 2ax4A 198 3.051 2go7A 207 5.101 c.108.1.6 135434 1rypD 241 6.724 d.153.1.4 41935 2pezA 179 7.643 1k75A 434 11.40 c.82.1.2 68253 1e3mA 800 12.10 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1te2A 226 18.08 c.108.1.6 106792 1rypG 244 18.09 d.153.1.4 41938 2vg2A 284 20.26 1uf3A 228 20.48 d.159.1.6 99317 1rypB 250 21.75 d.153.1.4 41933 1g0uC 243 21.85 d.153.1.4 41948 1ojqA 212 23.04 d.166.1.1 93146 1g61A 228 23.09 d.126.1.1 41126 2o8bB 1022 23.27 1yb0A 159 23.33 d.118.1.1 122865 2yvuA 186 24.24 1musA 477 26.98 c.55.3.4 79494 2yvtA 260 27.18 1yarA 233 29.05 d.153.1.4 122837 2e2oA 299 33.23 2ou3A 161 34.08 1j97A 211 38.05 c.108.1.4 62753 1q5qA 259 38.90 d.153.1.4 95904 2nxfA 322 39.51 1l6rA 227 40.60 c.108.1.10 77768 1uumA 372 41.02 c.1.4.1 100010 2yhxA 457 43.84 i.12.1.1 46024 1qtwA 285 43.95 c.1.15.1 29392 2cmuA 342 46.66 1rypF 233 46.75 d.153.1.4 41937 1io2A 213 48.14 c.55.3.1 62612 1r45A 204 48.64 d.166.1.1 111683 1wviA 257 48.77 c.108.1.14 114915 1wb9A 800 50.92 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 2qn6A 414 51.55 1a0cA 438 51.83 c.1.15.3 29529 1ig8A 486 53.99 c.55.1.3,c.55.1.3 64746,64747 3cj1A 456 54.20 1v4sA 455 55.64 c.55.1.3,c.55.1.3 100309,100310 1nnwA 252 56.24 d.159.1.5 80674 2b0cA 206 56.42 c.108.1.2 127633 1j3gA 187 56.49 d.118.1.1 77075 1zavA 180 63.31 1alvA 173 63.56 a.39.1.8 17370 2qwxA 231 64.18 2i7aA 174 65.52 2af4C 333 65.56 c.77.1.5 126656 2jc5A 259 65.58 1gr0A 367 68.13 c.2.1.3,d.81.1.3 70379,70380 1f4qA 165 69.52 a.39.1.8 17360 1ly1A 181 72.86 c.37.1.1 74334 1m0dA 138 73.26 c.52.1.17 74354 1gk9B 557 75.86 1dbfA 127 76.66 d.79.1.2 39761 2fdrA 229 76.83 c.108.1.6 133319 1e3aB 560 77.27 2uyzB 79 78.38 d.15.1.1 140039 2p02A 396 79.41 1rypC 244 79.98 d.153.1.4 41934 2nrrA 159 80.36 2vg3A 284 81.49 2iw1A 374 82.72 c.87.1.8 137738 1rypI 222 84.10 d.153.1.4 41877 2gwmA 200 86.58 1yckA 175 86.61 d.118.1.1 122968 1k94A 165 86.84 a.39.1.8 68333 3ciwA 348 88.64