# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 9.66e-28 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.29e-26 c.55.3.10 120785 2qh9A 184 0.1487 1zc6A 305 0.1731 c.55.1.5,c.55.1.5 124888,124889 2o8bB 1022 0.3129 2f2hA 773 5.507 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2ivnA 330 6.137 2vg3A 284 6.842 2c9hA 444 7.140 1ewqA 765 7.639 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1k77A 260 8.040 c.1.15.5 72096 1czaN 917 8.453 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2g5fA 450 8.527 d.161.1.1 134654 2basA 431 8.717 c.1.33.1,d.110.6.2 128244,128245 1rcqA 357 9.856 b.49.2.2,c.1.6.1 104882,104883 1f75A 249 10.15 c.101.1.1 59662 1yaaA 412 10.19 c.67.1.1 34280 1ru8A 232 10.64 c.26.2.1 97849 2napA 723 11.23 b.52.2.2,c.81.1.1 26926,35334 1q9jA 422 13.11 c.43.1.2,c.43.1.2 104590,104591 1eovA 487 13.17 b.40.4.1,d.104.1.1 25239,40760 1uf3A 228 14.82 d.159.1.6 99317 2as0A 396 15.55 b.122.1.9,c.66.1.51 127227,127228 2qp2A 511 17.16 1j3gA 187 18.58 d.118.1.1 77075 2zf5O 497 19.14 2bqxA 173 20.79 2q01A 497 21.37 1rypF 233 21.40 d.153.1.4 41937 1v4sA 455 22.93 c.55.1.3,c.55.1.3 100309,100310 1xkpC 143 23.56 d.198.1.1 122088 1rypB 250 23.66 d.153.1.4 41933 2vfxA 206 25.36 1uwkA 557 26.62 e.51.1.1 108065 1s3iA 310 26.96 b.46.1.1,c.65.1.1 98435,98436 1j5xA 342 27.35 c.80.1.1 71591 1z15A 344 28.94 1qhtA 775 29.32 c.55.3.5,e.8.1.1 33722,43011 1z7gA 217 29.91 c.61.1.1 124624 1f6yA 262 30.08 c.1.21.2 29673 1ni5A 433 30.46 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2bwvA 440 30.71 c.55.2.1,d.127.1.1 129387,129388 2q8kA 401 30.90 3c86A 328 30.99 1yqzA 438 32.31 2d2jA 329 32.34 c.1.9.3 131175 1zk7A 467 32.95 2ax4A 198 33.79 1k6wA 426 34.05 b.92.1.2,c.1.9.5 68236,68237 1aszB 490 35.75 b.40.4.1,d.104.1.1 25241,40762 1q15A 503 35.82 c.26.2.1,d.153.1.1 95538,95539 1vs0A 310 36.50 1rypD 241 37.62 d.153.1.4 41935 3d8kA 377 38.54 1c8bA 371 41.06 c.56.1.2 59082 1mpxA 615 41.48 b.18.1.13,c.69.1.21 85041,85042 2qxfA 482 44.31 1cs0A 1073 44.69 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 3bc9A 599 45.88 2og2A 359 46.70 2e2oA 299 47.21 2cmuA 342 47.54 2vg2A 284 48.07 1dj0A 264 48.89 d.265.1.1 90337 1nnwA 252 50.62 d.159.1.5 80674 2qsfA 533 51.15 1ltqA 301 51.68 c.108.1.9,c.37.1.1 78208,78209 2yvtA 260 51.80 1g9gA 629 51.91 a.102.1.2 83279 1vrtA 560 53.17 c.55.3.1,e.8.1.2 33574,43023 1kqpA 271 54.73 c.26.2.1 72883 1pj5A 830 54.88 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1sc3A 178 55.77 c.17.1.1 105416 1e4fT 419 56.32 c.55.1.1,c.55.1.1 33453,33454 1nmsA 249 56.71 c.17.1.1 85879 3di4A 286 57.77 1oz2A 331 58.79 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1smd 496 59.83 2j3xA 431 60.00 1r53A 382 61.24 d.258.1.1 97063 2c1gA 431 61.49 c.6.2.3,d.341.1.1 129632,129633 1v5xA 203 61.66 c.1.2.4 100377 1s2oA 244 62.21 c.108.1.10 118846 1kvkA 395 62.43 d.14.1.5,d.58.26.3 73060,73061 1nw3A 416 63.13 c.66.1.31 86288 2p02A 396 64.48 1g0uC 243 66.99 d.153.1.4 41948 2q40A 367 67.47 e.50.1.1 139814 2ej8A 160 67.66 1e7uA 961 67.72 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2qulA 290 67.95 1eg7A 557 68.68 c.37.1.10 32241 2qxlA 658 68.78 1yueA 427 68.88 3pmgA 561 68.88 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2gl5A 410 69.61 c.1.11.2,d.54.1.1 135336,135337 1lokA 291 70.38 c.56.5.4 78122 2heuA 401 70.68 2d4wA 504 73.02 1lrzA 426 73.37 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1m0dA 138 74.02 c.52.1.17 74354 1rhfA 182 74.33 b.1.1.1,b.1.1.4 97469,97470 1cs8A 316 75.02 d.3.1.1 37065 1bbpA 173 75.09 b.60.1.1 27147 2o8bA 934 76.61 3dhpA 496 76.66 1fzrA 138 76.67 c.52.1.17 33336 1gg3A 279 76.88 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1j5sA 463 77.47 c.1.9.8 71580 1x7yA 400 77.61 c.36.1.11 114944 1tfrA 305 78.13 a.60.7.1,c.120.1.2 18081,33351 1satA 471 78.19 b.80.7.1,d.92.1.6 28014,40300 2mbrA 340 78.81 d.145.1.2,d.146.1.1 41749,41762 1rmgA 422 78.87 b.80.1.3 28029 1ojqA 212 79.61 d.166.1.1 93146 1ig8A 486 79.83 c.55.1.3,c.55.1.3 64746,64747 1e5mA 416 80.94 c.95.1.1,c.95.1.1 58973,58974 2nxvA 249 81.24 1oi4A 193 81.29 c.23.16.2 87047 1xngA 268 82.02 c.26.2.1 122186 1sxvA 172 82.97 2iw1A 374 83.30 c.87.1.8 137738 2ob3A 330 83.55 2ivfA 976 83.63 1phpA 394 85.11 c.86.1.1 35452 1xdiA 499 85.65 c.3.1.5,d.87.1.1 115160,115161 2qghA 425 87.05 2pezA 179 88.29