# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	4.34e-30	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	2.08e-28	c.55.3.10	120785
1zc6A	305	0.1141	c.55.1.5,c.55.1.5	124888,124889
2qh9A	184	0.2855		
1wb9A	800	10.74	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	120833,120834,120835,120836
1rypD	241	14.79	d.153.1.4	41935
2v3vA	723	16.74		
1q9jA	422	18.04	c.43.1.2,c.43.1.2	104590,104591
1musA	477	26.30	c.55.3.4	79494
1ru8A	232	26.61	c.26.2.1	97849
1v4sA	455	26.99	c.55.1.3,c.55.1.3	100309,100310
2acvA	463	30.03		
2ax4A	198	30.15		
1k2yX	463	31.36	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1ei6A	406	31.83	c.76.1.4	90443
1p5dX	463	32.02	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
1ojqA	212	33.11	d.166.1.1	93146
1tfrA	305	33.35	a.60.7.1,c.120.1.2	18081,33351
1cl8A	276	34.10	c.52.1.1	33230
2q8kA	401	36.40		
1m0dA	138	36.52	c.52.1.17	74354
1l6rA	227	37.52	c.108.1.10	77768
1uozA	315	38.04	c.6.1.1	113354
1fzrA	138	38.30	c.52.1.17	33336
2e2oA	299	38.31		
1wqaA	455	39.69		
2vg2A	284	41.41		
1f75A	249	41.52	c.101.1.1	59662
2napA	723	41.85	b.52.2.2,c.81.1.1	26926,35334
1nnwA	252	42.57	d.159.1.5	80674
3bijA	285	42.83		
1j97A	211	44.63	c.108.1.4	62753
1mpxA	615	45.24	b.18.1.13,c.69.1.21	85041,85042
1rypF	233	49.55	d.153.1.4	41937
2o8bB	1022	52.11		
2bqxA	173	52.46		
2vfxA	206	52.47		
1xkpC	143	53.96	d.198.1.1	122088
2pezA	179	54.00		
2gqwA	408	57.15		
1rypA	243	57.47	d.153.1.4	41932
1s3iA	310	57.52	b.46.1.1,c.65.1.1	98435,98436
1g0uC	243	58.45	d.153.1.4	41948
1xewY	172	59.66		
1uf3A	228	60.16	d.159.1.6	99317
1g0uG	252	60.28	d.153.1.4	41952
2e7zA	727	60.66		
1yqzA	438	61.00		
1z7gA	217	61.08	c.61.1.1	124624
2nrrA	159	66.74		
3ciwA	348	68.01		
1yarA	233	69.63	d.153.1.4	122837
2qtpA	194	71.09		
1c8bA	371	73.20	c.56.1.2	59082
2vg3A	284	73.87		
1auk	489	76.81		
2iw1A	374	77.06	c.87.1.8	137738
2vchA	480	79.38		
1yb0A	159	79.73	d.118.1.1	122865
1r45A	204	79.84	d.166.1.1	111683
2ga9A	297	80.93	c.66.1.25	134885
1l7mA	211	81.84	c.108.1.4	73664
1khvA	516	81.93	e.8.1.4	68627
1dbfA	127	84.11	d.79.1.2	39761
2d2jA	329	84.13	c.1.9.3	131175
1ly1A	181	84.78	c.37.1.1	74334
1s2oA	244	86.05	c.108.1.10	118846
2z08A	137	86.11