# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.28e-22 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.35e-21 c.55.3.10 120785 2qh9A 184 0.8445 1rypD 241 3.205 d.153.1.4 41935 2b3zA 373 8.545 c.71.1.2,c.97.1.2 127807,127808 2ivnA 330 9.316 1g0uC 243 9.363 d.153.1.4 41948 1zc6A 305 10.20 c.55.1.5,c.55.1.5 124888,124889 1rypB 250 13.18 d.153.1.4 41933 3d8kA 377 13.54 2yvtA 260 13.56 1r59O 505 14.72 c.55.1.4,c.55.1.4 111697,111698 2apjA 260 15.13 c.23.10.7 127128 1v4sA 455 15.97 c.55.1.3,c.55.1.3 100309,100310 2p3rA 510 18.05 c.55.1.4,c.55.1.4 139471,139472 2zf5O 497 18.28 2e2oA 299 20.26 2o0tA 467 20.38 1rypF 233 21.49 d.153.1.4 41937 1uf3A 228 24.72 d.159.1.6 99317 2hxvA 360 26.34 c.71.1.2,c.97.1.2 136859,136860 1aozA 552 26.44 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1glcG 501 27.74 c.55.1.4,c.55.1.4 33519,33520 2go7A 207 28.17 c.108.1.6 135434 1zyeA 220 29.59 c.47.1.10 125817 1a0cA 438 30.15 c.1.15.3 29529 2ch5A 347 32.55 c.55.1.5,c.55.1.5 130453,130454 1noyA 388 32.81 c.55.3.5 33713 1bu6O 501 33.32 c.55.1.4,c.55.1.4 33499,33500 1s1mA 545 33.71 c.23.16.1,c.37.1.10 105201,105202 1yarA 233 35.75 d.153.1.4 122837 1rypC 244 36.31 d.153.1.4 41934 2ax4A 198 37.90 1rypG 244 38.81 d.153.1.4 41938 2a22A 215 38.83 d.159.1.7 126025 1woqA 267 38.92 c.55.1.10,c.55.1.10 109462,109463 2d4wA 504 41.89 1l6rA 227 42.02 c.108.1.10 77768 1s3iA 310 42.63 b.46.1.1,c.65.1.1 98435,98436 2napA 723 44.18 b.52.2.2,c.81.1.1 26926,35334 1okjA 251 44.31 c.55.1.9,c.55.1.9 103998,103999 1yqzA 438 45.35 2yhx 457 46.74 1j97A 211 47.55 c.108.1.4 62753 1lt8A 406 47.91 c.1.26.1 78186 2qx2A 344 48.12 2qeeA 437 49.09 2yhxA 457 51.88 i.12.1.1 46024 1ido 192 53.64 1ig8A 486 54.54 c.55.1.3,c.55.1.3 64746,64747 1qhtA 775 55.77 c.55.3.5,e.8.1.1 33722,43011 1tfrA 305 57.41 a.60.7.1,c.120.1.2 18081,33351 1musA 477 58.46 c.55.3.4 79494 2qghA 425 59.28 3cneA 175 61.96 1uehA 253 62.30 c.101.1.1 99259 1c8bA 371 62.78 c.56.1.2 59082 1io2A 213 63.72 c.55.3.1 62612 2v3aA 384 63.75 2z08A 137 67.62 2ih8A 559 68.42 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1knwA 425 71.99 b.49.2.3,c.1.6.1 90969,90970 2gelA 231 72.14 1vfsA 386 72.98 b.49.2.2,c.1.6.1 108584,108585 1auk 489 74.04 1qqcA 773 75.05 c.55.3.5,e.8.1.1 33724,43013 2qulA 290 79.77 1f75A 249 79.81 c.101.1.1 59662 2hoeA 380 79.86 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1jdwA 423 80.93 d.126.1.2 41129 1ekeA 230 81.83 c.55.3.1 33572 1sz2A 332 82.30 c.55.1.7 112169 2uytA 489 82.57 1oneA 436 82.60 c.1.11.1,d.54.1.1 29200,38844 1g0uG 252 82.84 d.153.1.4 41952 1e4fT 419 84.63 c.55.1.1,c.55.1.1 33453,33454 1jj2B 337 85.73 b.43.3.2 63086 2bmfA 451 86.42 c.37.1.14,c.37.1.14 128791,128792 2ap1A 327 87.73 c.55.1.10,c.55.1.10 127108,127109 1iatA 557 89.65 c.80.1.2 62123