# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 2.10e-10 c.55.3.10 120785 1u04A 771 2.98e-09 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 0.3664 2qm1A 326 0.6431 1e4fT 419 1.139 c.55.1.1,c.55.1.1 33453,33454 2yvuA 186 1.495 2ap1A 327 2.000 c.55.1.10,c.55.1.10 127108,127109 2pezA 179 2.257 2ax4A 198 2.395 2ivnA 330 2.541 2hoeA 380 2.676 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2gelA 231 3.225 1z6rA 406 3.416 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2itmA 484 3.733 2d4wA 504 4.395 1woqA 267 4.466 c.55.1.10,c.55.1.10 109462,109463 2e2oA 299 4.917 1i39A 225 5.377 c.55.3.1 61585 2a6aA 218 6.173 c.55.1.9,c.55.1.9 126231,126232 2p3rA 510 7.167 c.55.1.4,c.55.1.4 139471,139472 1ekeA 230 8.480 c.55.3.1 33572 2aa4A 289 9.97 c.55.1.10,c.55.1.10 126465,126466 3cerA 343 10.34 2uytA 489 10.60 2h3gX 268 12.46 2d0bA 310 12.83 1bu6O 501 14.31 c.55.1.4,c.55.1.4 33499,33500 1okjA 251 14.37 c.55.1.9,c.55.1.9 103998,103999 1jcfA 344 15.78 c.55.1.1,c.55.1.1 62878,62879 1io2A 213 16.32 c.55.3.1 62612 1d4xA 375 18.26 c.55.1.1,c.55.1.1 59107,59108 1zc6A 305 20.39 c.55.1.5,c.55.1.5 124888,124889 2zf5O 497 21.36 1ig8A 486 24.55 c.55.1.3,c.55.1.3 64746,64747 1rkdA 309 25.25 c.72.1.1 34928 2yxtA 312 25.91 2ch5A 347 27.05 c.55.1.5,c.55.1.5 130453,130454 1rkd 309 27.55 1hjrA 158 27.59 c.55.3.6 33727 1vk3A 615 30.31 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2fv7A 331 30.77 c.72.1.1 134197 1jxhA 288 32.67 c.72.1.2 67415 2djlA 314 32.87 1j53A 186 33.10 c.55.3.5 77076 1u6zA 513 33.72 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1v4sA 455 34.12 c.55.1.3,c.55.1.3 100309,100310 1zkdA 387 35.70 c.66.1.52 125184 3cj1A 456 39.93 1d3gA 367 40.41 c.1.4.1 28600 2nrrA 159 40.96 1m7gA 211 43.61 c.37.1.4 78724 2de3A 365 43.84 2etjA 250 44.47 c.55.3.1 132360 1jubA 311 44.90 c.1.4.1 90908 1yuwA 554 45.85 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2qghA 425 50.86 2oosA 338 51.66 2j66A 428 53.17 3co8A 380 54.37 1lhpA 312 55.70 c.72.1.5 77960 1qj5A 429 58.03 c.67.1.4 34493 2b33A 140 58.26 d.79.1.1 127765 1thtA 305 58.78 c.69.1.13 34711 1jd1A 129 61.70 d.79.1.1 62890 1akyA 220 62.28 c.37.1.1,g.41.2.1 31896,45197 1ub0A 258 62.38 c.72.1.2 88394 2gupA 292 63.29 c.55.1.10,c.55.1.10 135744,135745 1xc3A 302 63.65 c.55.1.10,c.55.1.10 115102,115103 2c46A 241 64.82 1tyyA 339 64.89 c.72.1.1 112850 1l6sA 323 66.72 c.1.10.3 73627 2yhx 457 68.08 2b4gA 317 68.74 c.1.4.1 127829 2e6fA 314 68.95 2jisA 515 71.09 1bif 469 71.90 2yhxA 457 73.34 i.12.1.1 46024 1x6vA 630 74.28 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2podA 410 74.45 2yvpA 182 76.98 2cvlA 124 77.36 d.79.1.1 130871 1i9sA 210 79.80 c.45.1.1 62099 1bifA 469 80.94 c.37.1.7,c.60.1.4 31961,34003 3be4A 217 81.12 1dorA 311 83.10 c.1.4.1 28595 2f9zC 159 83.13 3cneA 175 83.23 1ug6A 431 84.76 c.1.8.4 88490 2ez2A 456 85.64 2qxfA 482 86.10 2v8pA 271 86.75 1qz5A 375 88.10 c.55.1.1,c.55.1.1 96614,96615 2o6lA 170 89.05 2bh9A 489 89.30 1t6cA 315 89.71 c.55.1.8,c.55.1.8 106558,106559