# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.754	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	3.645		
2dztA	248	5.830		
1qopA	268	7.507	c.1.2.4	28570
3bblA	287	8.587		
1ujpA	271	8.712	c.1.2.4	99462
1geqA	248	13.37	c.1.2.4	28589
2ekcA	262	13.51		
2tysA	268	16.75	c.1.2.4	28572
2d73A	738	17.34		
2fb2A	340	17.86		
1w9hA	427	18.05	c.55.3.10	120785
2gruA	368	19.48		
2h3hA	313	20.64		
2fepA	289	22.98		
2driA	271	25.57	c.93.1.1	35637
1kfcA	268	26.10	c.1.2.4	77371
1qgoA	264	27.05	c.92.1.2	35596
2ioyA	283	28.45		
1d1gA	168	28.74	c.71.1.1	34889
3c3kA	285	31.16		
2iksA	293	31.32		
1tv8A	340	32.95	c.1.28.3	107352
1dbqA	289	36.68	c.93.1.1	35666
2qmjA	870	36.77		
1qv9A	283	37.03	c.127.1.1	96356
2gmwA	211	37.73		
2rgyA	290	39.28		
1uqwA	509	39.32	c.94.1.1	99799
2g3mA	693	39.70		
3pga1	337	39.71		
2higA	487	44.59		
2hrcA	359	45.40	c.92.1.1	136687
1qpzA	340	45.50	a.35.1.5,c.93.1.1	17097,35673
1jftA	340	48.42	a.35.1.5,c.93.1.1	66652,66653
2qvcA	313	49.03		
4pgaA	337	49.22	c.88.1.1	35565
2c4wA	176	49.78		
1exbA	332	49.92	c.1.7.1	28666
1jdpA	441	54.03	c.93.1.1	62906
1byrA	155	54.28	d.136.1.1	41450
1j31A	262	55.12	d.160.1.2	90808
2hzqA	174	55.36		
2o20A	332	56.58		
1efaA	333	57.47	a.35.1.5,c.93.1.1	17106,35691
2b3zA	373	59.63	c.71.1.2,c.97.1.2	127807,127808
2p4gA	270	59.91		
1tlfA	301	61.12	c.93.1.1	35687
2dri	271	62.74		
1xsjA	778	63.52	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1tk9A	188	63.88	c.80.1.3	107082
1vb5A	276	64.42	c.124.1.5	113604
2ywxA	157	66.50		
2i2wA	212	66.66		
1rd5A	262	68.53	c.1.2.4	111772
2yxbA	161	69.21		
3c6qA	311	69.45		
2f5tX	233	71.54		
2himA	358	72.42		
1rxdA	159	75.88	c.45.1.1	111959
1oi2A	366	77.38	c.119.1.2	103802
1zckA	154	78.18		
2yv1A	294	79.26		
2uubK	129	79.62	c.55.4.1	139942
2o2xA	218	84.20		
2ebn	289	84.54		
2h4aA	325	85.60		
2f62A	161	86.00	c.23.14.1	133021
1xg4A	295	86.27		
1hrkA	359	87.01	c.92.1.1	61228
1vpwA	340	87.47	a.35.1.5,c.93.1.1	17087,35680