# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 0.4462 b.34.14.1,c.55.3.10 107539,107540 2dztA 248 1.257 3brqA 296 1.423 1qopA 268 1.582 c.1.2.4 28570 2driA 271 1.631 c.93.1.1 35637 2dri 271 1.784 3bblA 287 1.864 2d73A 738 1.900 2ioyA 283 1.933 1ujpA 271 2.204 c.1.2.4 99462 2h3hA 313 2.561 1geqA 248 2.788 c.1.2.4 28589 1tlfA 301 3.802 c.93.1.1 35687 2ekcA 262 3.968 1w9hA 427 4.496 c.55.3.10 120785 2tysA 268 4.951 c.1.2.4 28572 1d1gA 168 5.071 c.71.1.1 34889 1qgoA 264 5.201 c.92.1.2 35596 2qvcA 313 5.550 2o20A 332 5.582 1jftA 340 5.585 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 6.325 2fb2A 340 6.521 2higA 487 7.039 1xsjA 778 7.900 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1oi2A 366 9.464 c.119.1.2 103802 1qpzA 340 9.539 a.35.1.5,c.93.1.1 17097,35673 1kfcA 268 9.758 c.1.2.4 77371 1uqwA 509 9.844 c.94.1.1 99799 1qv9A 283 10.18 c.127.1.1 96356 1tjyA 316 10.19 c.93.1.1 107062 3c6qA 311 11.20 2c4wA 176 11.89 1tv8A 340 12.05 c.1.28.3 107352 3b79A 129 12.69 2yxoA 267 13.09 2yxbA 161 13.68 2g3mA 693 13.80 2fepA 289 13.90 2yv1A 294 14.98 2gruA 368 15.96 2f48A 555 16.15 c.89.1.1 132915 2f2hA 773 16.17 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1ea9C 583 16.20 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1yqhA 109 18.22 d.58.48.1 123886 1rpxA 230 18.22 c.1.2.2 28536 1a53 247 18.32 2p4gA 270 18.63 1igs 248 19.23 1i4nA 251 19.30 c.1.2.4 71114 1hrkA 359 19.53 c.92.1.1 61228 3d02A 303 19.73 1ii7A 333 21.20 d.159.1.4 62415 2b3zA 373 21.80 c.71.1.2,c.97.1.2 127807,127808 2qmjA 870 22.13 2scuA 288 22.57 c.2.1.8,c.23.4.1 30303,31131 1jdpA 441 22.67 c.93.1.1 62906 1zzmA 259 23.92 c.1.9.12 125911 2iksA 293 24.51 2rjoA 332 26.08 1usgA 346 26.10 c.93.1.1 99864 1efaA 333 27.77 a.35.1.5,c.93.1.1 17106,35691 1je0A 236 27.80 c.56.2.1 66581 2hrcA 359 28.26 c.92.1.1 136687 3ctpA 330 30.80 1j31A 262 30.85 d.160.1.2 90808 1rxdA 159 32.19 c.45.1.1 111959 2qv5A 261 34.28 1rd5A 262 34.52 c.1.2.4 111772 1j6oA 268 35.01 c.1.9.12 77088 1un8A 552 36.24 c.119.1.2,a.208.1.1 103806,99661 1dbqA 289 36.27 c.93.1.1 35666 2f06A 144 37.53 d.58.18.11,d.58.18.11 132652,132653 3pga1 337 37.57 1qupA 222 38.34 b.1.8.1,d.58.17.1 22301,39352 1x24A 180 39.77 2uubK 129 40.24 c.55.4.1 139942 1pii 452 40.41 1cxlA 686 41.48 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 3bilA 348 41.91 1vpwA 340 42.05 a.35.1.5,c.93.1.1 17087,35680 1jyeA 349 42.29 c.93.1.1 67455 2h4aA 325 42.78 1t3bA 211 43.68 c.47.1.9,d.17.3.1 106341,106342 3brsA 289 43.76 2hzqA 174 43.95 2dfzA 381 44.06 1zckA 154 44.36 1wtaA 275 44.55 1qczA 169 45.83 c.23.8.1 31276 1jq5A 370 47.12 e.22.1.2 67084 1dozA 309 47.36 c.92.1.1 35592 1xmpA 170 47.69 c.23.8.1 115521 2fn9A 290 47.99 2aznA 219 48.20 c.71.1.2 127608 1pvmA 184 48.49 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2h9aA 445 48.75 1byrA 155 50.71 d.136.1.1 41450 3c3kA 285 52.53 1mylA 53 53.24 a.43.1.1 17427 1wviA 257 54.01 c.108.1.14 114915 1eejA 216 54.90 c.47.1.9,d.17.3.1 33057,38071 1o4vA 183 55.70 c.23.8.1 86628 2ac2A 309 56.22 1nnsA 326 56.95 c.88.1.1 85910 1wzlA 585 57.04 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2hk0A 309 57.15 1gqnA 252 58.10 c.1.10.1 90514 2ywiA 196 58.50 2vlbA 251 58.97 2fprA 176 59.73 c.108.1.19 133919 2ebn 289 59.84 1lxjA 104 59.97 d.58.48.1 84736 2himA 358 60.47 1bykA 255 62.21 c.93.1.1 35706 2pa5A 314 64.16 2qulA 290 64.18 2yvuA 186 65.21 3b5vA 248 65.75 1ji2A 585 66.91 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1byb 495 67.72 1xkyA 301 67.91 c.1.10.1 122094 2h1vA 310 68.49 1bazA 53 68.73 a.43.1.1 17421 1oj5A 132 69.68 d.110.3.8 93087 2gmwA 211 69.95 1fyvA 161 70.04 c.23.2.1 31127 2p0oA 372 70.34 4pgaA 337 70.63 c.88.1.1 35565 2bonA 332 70.64 1u11A 182 71.28 c.23.8.1 107576 1b1cA 181 71.62 c.23.5.2 31212 2gh9A 386 71.99 8abp 306 73.35 1b9zA 516 73.98 b.3.1.1,c.1.8.1 22528,28798 1a53A 247 74.35 c.1.2.4 28564 2fncA 381 74.42 2a0nA 265 75.07 c.1.2.1 125961 1wdpA 495 75.07 c.1.8.1 120907 1mxiA 160 75.51 c.116.1.1 79646 2vqeK 129 76.50 1wmhB 86 76.95 d.15.2.2 114745 1mc3A 296 77.37 c.68.1.6 78943 1h3gA 601 78.14 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1g5hA 454 78.17 c.51.1.1,d.104.1.1 60270,60271 1zq1A 438 79.35 b.38.3.1,c.88.1.1 125489,125490 1y5hA 133 80.01 d.37.1.1,d.37.1.1 122635,122636 1zu0A 529 80.22 1vl2A 421 80.50 c.26.2.1,d.210.1.1 108708,108709 1bdtA 53 81.03 a.43.1.1 17433 1ble 163 81.88 3d0cA 314 82.07 2o2xA 218 82.24 2cm2A 304 82.42 c.45.1.2 130610 3cnyA 301 82.98 1e19A 314 83.51 c.73.1.1 34967 1vb5A 276 85.80 c.124.1.5 113604 2f9sA 151 85.84 c.47.1.10 133168 1mykA 53 85.84 a.43.1.1 17425 1h1yA 228 86.01 c.1.2.2 76506 1vpqA 273 86.14 c.1.32.1 113974 1fxjA 331 86.17 b.81.1.4,c.68.1.5 28062,34520 1konA 249 86.55 e.39.1.1 72823 1bx4A 345 87.67 c.72.1.1 34935 2fhpA 187 89.04 c.66.1.46 133495