# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3brqA 296 0.4955 1u04A 771 0.5608 b.34.14.1,c.55.3.10 107539,107540 1qopA 268 0.8051 c.1.2.4 28570 2dztA 248 1.212 3bblA 287 1.474 1ujpA 271 1.693 c.1.2.4 99462 2ekcA 262 2.325 1geqA 248 3.209 c.1.2.4 28589 2tysA 268 3.871 c.1.2.4 28572 2fepA 289 3.920 2d73A 738 4.475 2h3hA 313 4.819 2dri 271 5.434 2fb2A 340 6.237 1kfcA 268 6.583 c.1.2.4 77371 2rgyA 290 6.692 2driA 271 6.804 c.93.1.1 35637 1w9hA 427 6.829 c.55.3.10 120785 3c3kA 285 7.722 2iksA 293 8.064 1jftA 340 8.263 a.35.1.5,c.93.1.1 66652,66653 1qgoA 264 9.887 c.92.1.2 35596 2qvcA 313 10.44 2ioyA 283 11.63 1jdpA 441 11.97 c.93.1.1 62906 1uqwA 509 12.21 c.94.1.1 99799 2yxbA 161 13.43 1d1gA 168 14.13 c.71.1.1 34889 1tv8A 340 14.34 c.1.28.3 107352 1tlfA 301 14.99 c.93.1.1 35687 2hrcA 359 15.37 c.92.1.1 136687 1dozA 309 15.60 c.92.1.1 35592 2gruA 368 16.77 3c6qA 311 17.20 1qpzA 340 17.55 a.35.1.5,c.93.1.1 17097,35673 1efaA 333 17.74 a.35.1.5,c.93.1.1 17106,35691 2higA 487 18.37 1qv9A 283 19.54 c.127.1.1 96356 1vpwA 340 21.79 a.35.1.5,c.93.1.1 17087,35680 2hzqA 174 22.17 2qmjA 870 26.08 2f62A 161 28.65 c.23.14.1 133021 1zckA 154 28.80 2g3mA 693 28.81 1rxdA 159 29.92 c.45.1.1 111959 4pgaA 337 31.24 c.88.1.1 35565 2o20A 332 32.42 1dbqA 289 33.35 c.93.1.1 35666 2gmwA 211 34.86 2h4aA 325 36.31 3ctpA 330 38.82 2rjoA 332 39.92 3c37A 253 42.15 2yxoA 267 42.23 2b3zA 373 42.71 c.71.1.2,c.97.1.2 127807,127808 2p4gA 270 44.15 1hrkA 359 44.90 c.92.1.1 61228 2f2hA 773 45.12 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1vb5A 276 46.06 c.124.1.5 113604 1usgA 346 46.99 c.93.1.1 99864 1tk9A 188 47.69 c.80.1.3 107082 2c4wA 176 48.68 3pga1 337 56.29 2f06A 144 62.45 d.58.18.11,d.58.18.11 132652,132653 2f48A 555 63.93 c.89.1.1 132915 1wtaA 275 65.70 3d0cA 314 67.36 2cm2A 304 68.08 c.45.1.2 130610 1ii7A 333 68.76 d.159.1.4 62415 1rd5A 262 69.67 c.1.2.4 111772 1byrA 155 69.73 d.136.1.1 41450 2pa5A 314 69.86 1e39A 571 69.97 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1ea9C 583 70.77 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2dplA 308 71.42 3cucA 291 71.48 1tjyA 316 72.66 c.93.1.1 107062 1lbqA 362 73.33 c.92.1.1 77877 1fdr 248 75.11 2aznA 219 78.95 c.71.1.2 127608 1exbA 332 79.14 c.1.7.1 28666 2ebn 289 80.57 1f0xA 571 81.30 d.58.32.2,d.145.1.1 39483,41746 2fhpA 187 81.43 c.66.1.46 133495 3cnyA 301 81.56 2ywxA 157 83.33 2o2xA 218 84.37 1e19A 314 84.46 c.73.1.1 34967 2is8A 164 85.11 1xp3A 307 88.16 c.1.15.1 122210 1jx6A 342 88.44 c.93.1.1 67406 1u9yA 284 89.73 c.61.1.2,c.61.1.2 119655,119656