# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.3530	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	0.4029		
1qopA	268	0.8405	c.1.2.4	28570
3bblA	287	1.117		
1ujpA	271	1.208	c.1.2.4	99462
2dztA	248	1.573		
2ekcA	262	2.625		
1geqA	248	3.233	c.1.2.4	28589
3c3kA	285	3.681		
2tysA	268	3.689	c.1.2.4	28572
2fepA	289	3.727		
2h3hA	313	4.786		
2higA	487	4.955		
1jftA	340	6.038	a.35.1.5,c.93.1.1	66652,66653
2driA	271	6.309	c.93.1.1	35637
2dri	271	6.714		
2d73A	738	7.254		
1w9hA	427	7.849	c.55.3.10	120785
1kfcA	268	8.089	c.1.2.4	77371
2iksA	293	8.190		
2rgyA	290	8.273		
2fb2A	340	8.328		
2gruA	368	9.524		
1qv9A	283	10.53	c.127.1.1	96356
1efaA	333	10.98	a.35.1.5,c.93.1.1	17106,35691
1qgoA	264	12.00	c.92.1.2	35596
1jdpA	441	12.35	c.93.1.1	62906
1d1gA	168	12.53	c.71.1.1	34889
2yxbA	161	13.75		
1uqwA	509	13.75	c.94.1.1	99799
3c6qA	311	14.19		
1qpzA	340	14.83	a.35.1.5,c.93.1.1	17097,35673
2qvcA	313	15.93		
2hrcA	359	17.94	c.92.1.1	136687
1tv8A	340	18.63	c.1.28.3	107352
1vpwA	340	19.84	a.35.1.5,c.93.1.1	17087,35680
1tlfA	301	20.21	c.93.1.1	35687
2ioyA	283	20.30		
1dozA	309	21.67	c.92.1.1	35592
2hzqA	174	26.48		
1zckA	154	31.09		
2g3mA	693	34.20		
2rjoA	332	34.50		
2qmjA	870	34.86		
2f2hA	773	35.10	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2b3zA	373	35.29	c.71.1.2,c.97.1.2	127807,127808
4pgaA	337	35.75	c.88.1.1	35565
2o20A	332	36.47		
2f48A	555	37.70	c.89.1.1	132915
1rxdA	159	37.84	c.45.1.1	111959
1rd5A	262	38.24	c.1.2.4	111772
2gmwA	211	39.03		
2cm2A	304	39.07	c.45.1.2	130610
1vb5A	276	39.19	c.124.1.5	113604
2c4wA	176	39.35		
2f62A	161	39.95	c.23.14.1	133021
2h4aA	325	44.23		
1dbqA	289	44.48	c.93.1.1	35666
1ii7A	333	45.85	d.159.1.4	62415
2ebn	289	47.59		
2p4gA	270	47.70		
1hrkA	359	50.85	c.92.1.1	61228
1byrA	155	51.68	d.136.1.1	41450
1u9yA	284	53.73	c.61.1.2,c.61.1.2	119655,119656
2imiA	221	53.85		
1tk9A	188	58.98	c.80.1.3	107082
2f5tX	233	62.62		
3pga1	337	62.69		
1ea9C	583	64.31	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1lbqA	362	65.52	c.92.1.1	77877
3ctpA	330	65.80		
2aznA	219	65.92	c.71.1.2	127608
1usgA	346	68.36	c.93.1.1	99864
2qu7A	288	69.11		
3c37A	253	69.87		
1exbA	332	70.24	c.1.7.1	28666
2d59A	144	71.70	c.2.1.8	131266
1oj5A	132	74.49	d.110.3.8	93087
2pa5A	314	75.33		
1k92A	455	75.97	c.26.2.1,d.210.1.1	68325,68326
2ywxA	157	81.17		
2qulA	290	82.64		
2pagA	135	83.06		
1q5zA	177	83.51	a.196.1.1	95954
2f06A	144	83.91	d.58.18.11,d.58.18.11	132652,132653
2uubK	129	84.32	c.55.4.1	139942
2qgqA	304	85.19		
1kcxA	518	86.47	b.92.1.3,c.1.9.6	90953,90954
1h7eA	245	86.68	c.68.1.13	60717
3cnyA	301	89.53