# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.012	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	1.426		
1qopA	268	1.559	c.1.2.4	28570
2dztA	248	3.338		
1ujpA	271	3.432	c.1.2.4	99462
3bblA	287	4.019		
2ekcA	262	4.165		
1geqA	248	5.694	c.1.2.4	28589
2tysA	268	6.344	c.1.2.4	28572
1w9hA	427	7.507	c.55.3.10	120785
2d73A	738	7.818		
2ioyA	283	9.518		
2driA	271	11.03	c.93.1.1	35637
2h3hA	313	11.11		
1kfcA	268	11.89	c.1.2.4	77371
2higA	487	12.17		
2dri	271	12.52		
1qgoA	264	13.08	c.92.1.2	35596
1d1gA	168	14.56	c.71.1.1	34889
1jdpA	441	16.60	c.93.1.1	62906
2hrcA	359	19.86	c.92.1.1	136687
1jftA	340	21.01	a.35.1.5,c.93.1.1	66652,66653
2fb2A	340	21.14		
1uqwA	509	21.90	c.94.1.1	99799
2gmwA	211	22.14		
2gruA	368	23.41		
2g3mA	693	23.44		
2qmjA	870	24.42		
1tlfA	301	26.94	c.93.1.1	35687
2fepA	289	27.17		
3c3kA	285	28.60		
2o20A	332	29.19		
1qpzA	340	30.62	a.35.1.5,c.93.1.1	17097,35673
1efaA	333	31.93	a.35.1.5,c.93.1.1	17106,35691
1mylA	53	34.18	a.43.1.1	17427
4pgaA	337	36.37	c.88.1.1	35565
1qv9A	283	36.52	c.127.1.1	96356
2hzqA	174	36.70		
2yxbA	161	37.99		
2yxoA	267	40.95		
1tv8A	340	41.90	c.1.28.3	107352
1bdtA	53	42.81	a.43.1.1	17433
1bazA	53	42.86	a.43.1.1	17421
1tjyA	316	43.32	c.93.1.1	107062
2yv1A	294	44.39		
3pga1	337	44.62		
1byrA	155	46.02	d.136.1.1	41450
2h4aA	325	46.23		
2f06A	144	47.89	d.58.18.11,d.58.18.11	132652,132653
1mykA	53	48.18	a.43.1.1	17425
1u9yA	284	48.93	c.61.1.2,c.61.1.2	119655,119656
1hrkA	359	50.80	c.92.1.1	61228
3b79A	129	53.70		
2f48A	555	55.22	c.89.1.1	132915
1vpwA	340	58.94	a.35.1.5,c.93.1.1	17087,35680
2iksA	293	58.94		
1zzmA	259	62.85	c.1.9.12	125911
2f62A	161	63.84	c.23.14.1	133021
2b3zA	373	64.03	c.71.1.2,c.97.1.2	127807,127808
2rgyA	290	65.09		
2c4wA	176	65.57		
2p4gA	270	65.60		
1dozA	309	65.67	c.92.1.1	35592
1a53	247	66.38		
1i4nA	251	66.59	c.1.2.4	71114
2qvcA	313	67.73		
1rxdA	159	68.96	c.45.1.1	111959
1tkkA	366	69.24	c.1.11.2,d.54.1.1	107089,107090
1usgA	346	69.43	c.93.1.1	99864
3c6qA	311	72.14		
2yx0A	342	72.40		
1exbA	332	72.64	c.1.7.1	28666
1igs	248	73.91		
1rd5A	262	74.18	c.1.2.4	111772
1zckA	154	75.54		
2f2hA	773	79.18	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1x24A	180	81.66		
2o2xA	218	83.78		
2ywxA	157	84.15		
3ckmA	327	84.75		
1xsjA	778	85.45	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2ebn	289	87.41