# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.282	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	1.615		
1qopA	268	1.917	c.1.2.4	28570
1ujpA	271	3.411	c.1.2.4	99462
2dztA	248	3.454		
2ekcA	262	4.618		
3bblA	287	5.635		
1geqA	248	6.035	c.1.2.4	28589
2tysA	268	7.319	c.1.2.4	28572
2d73A	738	9.243		
2ioyA	283	12.63		
1kfcA	268	13.91	c.1.2.4	77371
1w9hA	427	14.41	c.55.3.10	120785
2h3hA	313	14.77		
2dri	271	16.74		
2fb2A	340	19.25		
2qmjA	870	19.47		
2gmwA	211	19.83		
2driA	271	20.60	c.93.1.1	35637
2g3mA	693	20.79		
1qgoA	264	21.08	c.92.1.2	35596
2hzqA	174	22.60		
2gruA	368	24.25		
1d1gA	168	24.89	c.71.1.1	34889
2hrcA	359	25.01	c.92.1.1	136687
1jdpA	441	25.69	c.93.1.1	62906
2higA	487	26.07		
1tlfA	301	26.31	c.93.1.1	35687
1jftA	340	26.89	a.35.1.5,c.93.1.1	66652,66653
1uqwA	509	27.94	c.94.1.1	99799
1u9yA	284	29.69	c.61.1.2,c.61.1.2	119655,119656
2h4aA	325	33.90		
1efaA	333	34.09	a.35.1.5,c.93.1.1	17106,35691
1mylA	53	36.68	a.43.1.1	17427
2o20A	332	37.13		
3c3kA	285	37.96		
2fepA	289	38.36		
4pgaA	337	40.54	c.88.1.1	35565
1qv9A	283	41.71	c.127.1.1	96356
1tv8A	340	46.59	c.1.28.3	107352
2rgyA	290	47.50		
1qpzA	340	47.53	a.35.1.5,c.93.1.1	17097,35673
1byrA	155	48.23	d.136.1.1	41450
1bazA	53	49.12	a.43.1.1	17421
2yxbA	161	49.34		
1bdtA	53	49.80	a.43.1.1	17433
3pga1	337	50.68		
1rxdA	159	51.06	c.45.1.1	111959
2f62A	161	53.94	c.23.14.1	133021
1hrkA	359	56.79	c.92.1.1	61228
2yxoA	267	57.67		
1zckA	154	59.31		
2f06A	144	60.68	d.58.18.11,d.58.18.11	132652,132653
1mykA	53	61.52	a.43.1.1	17425
3ckmA	327	63.19		
1zzmA	259	63.98	c.1.9.12	125911
2c4wA	176	64.52		
1dozA	309	66.74	c.92.1.1	35592
1a53	247	71.38		
1tjyA	316	73.40	c.93.1.1	107062
1x24A	180	73.87		
3co4A	312	74.32		
2iksA	293	76.15		
1peaA	385	76.69	c.93.1.1	35662
2b3zA	373	77.49	c.71.1.2,c.97.1.2	127807,127808
2ywxA	157	77.60		
2f2hA	773	77.75	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2f5tX	233	82.32		
2ebn	289	82.50		
1igs	248	84.05		
2qvcA	313	84.37		
1xsjA	778	86.96	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954