# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	2.133	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	5.129		
1qopA	268	6.619	c.1.2.4	28570
2dztA	248	7.005		
3bblA	287	7.678		
3c3kA	285	10.52		
2ekcA	262	10.93		
1ujpA	271	12.09	c.1.2.4	99462
2d73A	738	16.53		
2tysA	268	19.26	c.1.2.4	28572
2fepA	289	21.22		
1kfcA	268	25.25	c.1.2.4	77371
1jftA	340	27.56	a.35.1.5,c.93.1.1	66652,66653
1geqA	248	28.66	c.1.2.4	28589
1qv9A	283	29.65	c.127.1.1	96356
1uqwA	509	30.57	c.94.1.1	99799
2gruA	368	32.65		
2iksA	293	34.38		
1efaA	333	38.20	a.35.1.5,c.93.1.1	17106,35691
2higA	487	39.67		
2fb2A	340	45.58		
2hzqA	174	45.76		
2qmjA	870	46.15		
2g3mA	693	50.00		
1dbqA	289	51.28	c.93.1.1	35666
1qgoA	264	54.02	c.92.1.2	35596
2hrcA	359	55.18	c.92.1.1	136687
1tv8A	340	55.74	c.1.28.3	107352
1jdpA	441	56.71	c.93.1.1	62906
1w9hA	427	61.46	c.55.3.10	120785
2o20A	332	62.79		
1d1gA	168	63.38	c.71.1.1	34889
2gmwA	211	63.92		
1qupA	222	66.90	b.1.8.1,d.58.17.1	22301,39352
3pga1	337	70.96		
2ebn	289	72.24		
2c4wA	176	75.89		
2rgyA	290	77.41		
2h3hA	313	77.62		
1oi2A	366	80.11	c.119.1.2	103802
4pgaA	337	81.44	c.88.1.1	35565
1vpwA	340	87.08	a.35.1.5,c.93.1.1	17087,35680