# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.8043	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	2.094		
2dztA	248	2.926		
3bblA	287	3.912		
1qopA	268	4.353	c.1.2.4	28570
2d73A	738	7.284		
2ekcA	262	8.817		
1ujpA	271	8.891	c.1.2.4	99462
1geqA	248	9.291	c.1.2.4	28589
3c3kA	285	12.25		
2tysA	268	14.59	c.1.2.4	28572
1uqwA	509	16.71	c.94.1.1	99799
2fepA	289	16.88		
1kfcA	268	18.24	c.1.2.4	77371
2iksA	293	18.28		
2rgyA	290	18.31		
2fb2A	340	19.09		
2gruA	368	19.75		
1w9hA	427	20.22	c.55.3.10	120785
1jftA	340	20.62	a.35.1.5,c.93.1.1	66652,66653
1qgoA	264	22.82	c.92.1.2	35596
1qv9A	283	23.81	c.127.1.1	96356
2g3mA	693	25.36		
2driA	271	25.82	c.93.1.1	35637
2dri	271	27.19		
2h3hA	313	27.74		
1d1gA	168	27.89	c.71.1.1	34889
2higA	487	29.15		
2ioyA	283	32.47		
1efaA	333	34.93	a.35.1.5,c.93.1.1	17106,35691
2qmjA	870	34.93		
1tv8A	340	36.69	c.1.28.3	107352
1dbqA	289	38.28	c.93.1.1	35666
1qupA	222	39.11	b.1.8.1,d.58.17.1	22301,39352
1qpzA	340	41.08	a.35.1.5,c.93.1.1	17097,35673
2hzqA	174	41.16		
2o20A	332	42.63		
2yxoA	267	43.89		
1jdpA	441	45.40	c.93.1.1	62906
2h4aA	325	46.35		
3pga1	337	48.30		
2ebn	289	48.47		
2f2hA	773	50.26	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2hrcA	359	50.52	c.92.1.1	136687
1oi2A	366	53.41	c.119.1.2	103802
3ctpA	330	57.43		
1xsjA	778	61.81	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2b3zA	373	61.87	c.71.1.2,c.97.1.2	127807,127808
2gmwA	211	64.90		
2qvcA	313	65.52		
1ea9C	583	66.40	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
4pgaA	337	66.49	c.88.1.1	35565
2c4wA	176	69.97		
1rd5A	262	71.79	c.1.2.4	111772
3b79A	129	72.59		
2f06A	144	73.95	d.58.18.11,d.58.18.11	132652,132653
1rxdA	159	76.25	c.45.1.1	111959
1wtaA	275	76.81		
1hrkA	359	83.19	c.92.1.1	61228
1tlfA	301	84.81	c.93.1.1	35687
1fyvA	161	85.33	c.23.2.1	31127
1vpwA	340	87.35	a.35.1.5,c.93.1.1	17087,35680