# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bblA	287	7.452		
1w9hA	427	7.809	c.55.3.10	120785
2dztA	248	12.35		
1u04A	771	12.66	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	14.15		
1geqA	248	19.23	c.1.2.4	28589
1ujpA	271	23.74	c.1.2.4	99462
2fepA	289	26.41		
2ekcA	262	29.79		
3c3kA	285	30.96		
1qopA	268	31.21	c.1.2.4	28570
2iksA	293	33.34		
2dkjA	407	40.48		
1d1gA	168	41.79	c.71.1.1	34889
2g3mA	693	42.43		
1jftA	340	44.31	a.35.1.5,c.93.1.1	66652,66653
2driA	271	46.26	c.93.1.1	35637
2fn9A	290	48.71		
1qczA	169	48.77	c.23.8.1	31276
1qpzA	340	52.06	a.35.1.5,c.93.1.1	17097,35673
1vpwA	340	53.43	a.35.1.5,c.93.1.1	17087,35680
2tysA	268	54.46	c.1.2.4	28572
1xsjA	778	55.34	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1tv8A	340	56.45	c.1.28.3	107352
2c4wA	176	56.89		
1dbqA	289	58.25	c.93.1.1	35666
2rgyA	290	60.53		
1jdpA	441	62.53	c.93.1.1	62906
1xmpA	170	62.59	c.23.8.1	115521
2f2hA	773	63.03	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2qmjA	870	67.44		
1efaA	333	77.25	a.35.1.5,c.93.1.1	17106,35691
2b3zA	373	78.43	c.71.1.2,c.97.1.2	127807,127808
1rd5A	262	79.20	c.1.2.4	111772
2gdqA	382	80.38	c.1.11.2,d.54.1.1	135020,135021
2fb2A	340	85.97		
1o4vA	183	88.55	c.23.8.1	86628