# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	4.449	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	4.900		
2dztA	248	7.165		
1qopA	268	7.871	c.1.2.4	28570
1geqA	248	8.821	c.1.2.4	28589
1ujpA	271	9.96	c.1.2.4	99462
1w9hA	427	10.14	c.55.3.10	120785
2fepA	289	14.50		
2iksA	293	15.98		
2tysA	268	16.52	c.1.2.4	28572
1qpzA	340	16.75	a.35.1.5,c.93.1.1	17097,35673
3c3kA	285	18.49		
1jftA	340	20.50	a.35.1.5,c.93.1.1	66652,66653
1dbqA	289	23.75	c.93.1.1	35666
1kfcA	268	24.30	c.1.2.4	77371
2ekcA	262	24.41		
2o20A	332	24.54		
1rd5A	262	26.32	c.1.2.4	111772
1vpwA	340	28.44	a.35.1.5,c.93.1.1	17087,35680
3bblA	287	29.03		
2rgyA	290	29.56		
2g3mA	693	37.00		
2ioyA	283	37.11		
2driA	271	37.64	c.93.1.1	35637
1tlfA	301	39.01	c.93.1.1	35687
2c4wA	176	39.09		
1efaA	333	39.67	a.35.1.5,c.93.1.1	17106,35691
2fb2A	340	42.48		
2dri	271	49.98		
1qczA	169	51.76	c.23.8.1	31276
1tv8A	340	51.98	c.1.28.3	107352
3ctpA	330	53.54		
2qmjA	870	57.68		
2a6nA	292	58.51	c.1.10.1	126289
2h6rA	219	60.27		
1xmpA	170	60.69	c.23.8.1	115521
1o4vA	183	61.92	c.23.8.1	86628
2a6lA	292	65.96	c.1.10.1	126285
1rxdA	159	67.56	c.45.1.1	111959
2ywxA	157	70.63		
1tk9A	188	71.41	c.80.1.3	107082
2gruA	368	72.16		
1qv9A	283	72.90	c.127.1.1	96356
2b3zA	373	73.47	c.71.1.2,c.97.1.2	127807,127808
1d1gA	168	76.93	c.71.1.1	34889
1xm7A	195	79.27	d.159.1.8	115473
2iumA	248	81.38		
1u11A	182	83.61	c.23.8.1	107576
2fn9A	290	86.02