# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3brqA 296 0.7302 1w9hA 427 1.589 c.55.3.10 120785 2rgyA 290 3.045 2q09A 416 8.189 1qycA 308 9.131 c.2.1.2 96581 1he2A 206 13.20 c.2.1.2 60966 2gasA 307 13.66 2f62A 161 16.56 c.23.14.1 133021 2o20A 332 16.58 2fn9A 290 16.68 1yacA 208 18.51 c.33.1.3 31757 1qydA 313 21.57 c.2.1.2 96583 2fepA 289 23.40 1yx1A 264 25.57 c.1.15.7 124169 3bblA 287 27.10 1gciA 269 27.97 c.41.1.1 32503 2hmcA 344 28.30 1yu6A 275 28.41 c.41.1.1 124040 1bh6A 274 30.29 c.41.1.1 32487 2ioyA 283 30.40 1ii7A 333 31.18 d.159.1.4 62415 1jftA 340 31.93 a.35.1.5,c.93.1.1 66652,66653 2f06A 144 31.95 d.58.18.11,d.58.18.11 132652,132653 2f2hA 773 32.25 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1nal1 297 33.00 1to2E 281 33.88 c.41.1.1 112595 1xsjA 778 36.15 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1x6vA 630 39.92 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2g3fA 421 40.21 1vemA 516 40.28 b.3.1.1,c.1.8.1 120021,120022 3c1oA 321 40.29 1eyeA 280 41.28 c.1.21.1 29672 2nuwA 288 41.72 2qvcA 313 42.69 1itcA 516 42.79 b.3.1.1,c.1.8.1 83705,83706 1pk9A 237 43.15 c.56.2.1 94823 2f5tX 233 44.08 1yrrA 382 44.11 b.92.1.5,c.1.9.10 123935,123936 3ctpA 330 45.68 1thmA 279 46.13 c.41.1.1 32544 2d73A 738 46.40 2qmjA 870 46.89 2b3zA 373 46.89 c.71.1.2,c.97.1.2 127807,127808 1hdoA 206 47.33 c.2.1.2 60965 1vpwA 340 48.30 a.35.1.5,c.93.1.1 17087,35680 1tr1A 447 48.60 c.1.8.4 28957 1mzhA 225 49.81 c.1.10.1 79698 1fdyA 297 51.26 c.1.10.1 29071 3c3kA 285 53.08 1vffA 423 53.23 c.1.8.4 120033 2i0fA 157 53.32 1gci 269 53.61 1efaA 333 53.84 a.35.1.5,c.93.1.1 17106,35691 1rxyA 253 54.09 c.56.2.1 98065 1s8eA 333 54.12 d.159.1.4 105368 1xmpA 170 54.57 c.23.8.1 115521 3bilA 348 54.71 1ykwA 435 55.64 c.1.14.1,d.58.9.1 123565,123566 2choA 716 56.75 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 2vktA 289 56.86 1tyyA 339 58.02 c.72.1.1 112850 1qpzA 340 59.70 a.35.1.5,c.93.1.1 17097,35673 1q6oA 216 60.13 c.1.2.3 95986 3cnqS 266 60.62 2ef0A 301 60.85 1konA 249 60.97 e.39.1.1 72823 2fi1A 190 61.15 c.108.1.3 133508 2gm3A 175 61.21 c.26.2.4 135354 1qdlB 195 61.96 c.23.16.1 31437 1to3A 304 63.82 c.1.10.1 107161 2gelA 231 64.25 1j5sA 463 64.82 c.1.9.8 71580 2g3mA 693 65.11 2qu7A 288 65.15 2p4gA 270 65.16 2eq5A 228 65.30 2oemA 413 65.59 2bdqA 224 67.18 2fb2A 340 67.83 1gca 309 68.19 2dhqA 146 68.28 c.23.13.1 31382 1xg4A 295 69.53 1gkmA 509 70.43 a.127.1.2 70228 1ad4A 266 70.81 c.1.21.1 29670 2hk0A 309 71.46 2bneA 241 72.20 c.73.1.3 128824 1dbiA 280 72.30 c.41.1.1 32543 1ra0A 430 72.47 b.92.1.2,c.1.9.5 111756,111757 1lxjA 104 74.49 d.58.48.1 84736 2i6jA 161 76.50 1wdpA 495 76.66 c.1.8.1 120907 2qlcA 126 77.29 1m3uA 264 77.65 c.1.12.8 84784 2driA 271 78.24 c.93.1.1 35637 1geqA 248 78.69 c.1.2.4 28589 1jyeA 349 79.21 c.93.1.1 67455 2j78A 468 79.93 c.1.8.4 138099 1obbA 480 79.94 c.2.1.5,d.162.1.2 86760,86761 2dt9A 167 79.99 2yxbA 161 80.21 1ta9A 450 80.75 1t0bA 252 80.92 c.23.16.6 106199 1jixA 351 81.81 c.87.1.1 63081 3ciwA 348 82.87 1usgA 346 83.63 c.93.1.1 99864 2fqxA 318 83.75 1r0rE 274 84.84 c.41.1.1 96735 2dqwA 294 85.96 2aznA 219 87.08 c.71.1.2 127608 1o4vA 183 87.95 c.23.8.1 86628 4xiaA 393 88.40 c.1.15.3 29439 2qv7A 337 89.93