Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template Template E-value A2M alignment SCOP Domain(s)
1w9hA 1.6596e+00 1w9hA/T0487-1w9hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.55.3.10
1u04A 5.3177e+00 1u04A/T0487-1u04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m b.34.14.1
c.55.3.10
3bblA 6.1359e+00 3bblA/T0487-3bblA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ur4A 7.4485e+00 1ur4A/T0487-1ur4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.1.8.3
1q0rA 1.4435e+01 1q0rA/T0487-1q0rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.69.1.28
2ywiA 1.8046e+01 2ywiA/T0487-2ywiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z00A 1.8149e+01 2z00A/T0487-2z00A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bzwA 2.2810e+01 3bzwA/T0487-3bzwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g2cA 2.4679e+01 2g2cA/T0487-2g2cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.57.1.1
1wkyA 2.5207e+01 1wkyA/T0487-1wkyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m b.18.1.31
c.1.8.3
1yx1A 2.5436e+01 1yx1A/T0487-1yx1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.1.15.7
2obbA 2.6320e+01 2obbA/T0487-2obbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vdwA 3.0687e+01 2vdwA/T0487-2vdwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ywrA 3.1848e+01 2ywrA/T0487-2ywrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2aouA 3.2465e+01 2aouA/T0487-2aouA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.66.1.19
1vc4A 3.5146e+01 1vc4A/T0487-1vc4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.1.2.4
2bw0A 3.6677e+01 2bw0A/T0487-2bw0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m b.46.1.1
c.65.1.1
1oj5A 3.7572e+01 1oj5A/T0487-1oj5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m d.110.3.8
1nrwA 4.2417e+01 1nrwA/T0487-1nrwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m c.108.1.10
2ek8A 4.5643e+01 2ek8A/T0487-2ek8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001